Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   U3P88_RS17425 Genome accession   NZ_CP140297
Coordinates   3607112..3607903 (+) Length   263 a.a.
NCBI ID   WP_003155502.1    Uniprot ID   A0A9Q3QM78
Organism   Bacillus velezensis strain UMAF6639     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3602112..3612903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS17400 (U3P88_17400) - 3604106..3604990 (+) 885 WP_061861285.1 PhzF family phenazine biosynthesis isomerase -
  U3P88_RS17405 (U3P88_17405) - 3605067..3605651 (+) 585 WP_022552782.1 nitroreductase -
  U3P88_RS17410 (U3P88_17410) - 3605691..3605882 (-) 192 WP_003155508.1 YfhD family protein -
  U3P88_RS17415 (U3P88_17415) - 3605953..3606063 (-) 111 WP_003155504.1 YfhE family protein -
  U3P88_RS17420 (U3P88_17420) - 3606121..3607020 (-) 900 WP_017419146.1 TIGR01777 family oxidoreductase -
  U3P88_RS17425 (U3P88_17425) recX 3607112..3607903 (+) 792 WP_003155502.1 recombination regulator RecX Regulator
  U3P88_RS17430 (U3P88_17430) - 3607910..3608218 (+) 309 Protein_3388 YfhH family protein -
  U3P88_RS17435 (U3P88_17435) - 3608368..3609561 (+) 1194 WP_076983103.1 MFS transporter -
  U3P88_RS17440 (U3P88_17440) - 3609601..3609990 (-) 390 WP_061861286.1 DUF2606 family protein -
  U3P88_RS17445 (U3P88_17445) - 3609953..3610864 (-) 912 WP_029973980.1 serine protease -
  U3P88_RS17450 (U3P88_17450) - 3611009..3611161 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  U3P88_RS17455 (U3P88_17455) - 3611285..3611554 (+) 270 WP_003155492.1 YfhJ family protein -
  U3P88_RS17460 (U3P88_17460) - 3611686..3612213 (+) 528 WP_022552788.1 SH3 domain-containing protein -
  U3P88_RS17465 (U3P88_17465) - 3612299..3612634 (+) 336 WP_017419152.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30978.18 Da        Isoelectric Point: 6.2735

>NTDB_id=913567 U3P88_RS17425 WP_003155502.1 3607112..3607903(+) (recX) [Bacillus velezensis strain UMAF6639]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=913567 U3P88_RS17425 WP_003155502.1 3607112..3607903(+) (recX) [Bacillus velezensis strain UMAF6639]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCGGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCATGGCGATGACGTGAAAAAAGCCTTTAATCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGATATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCATAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791