Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   U3P88_RS13355 Genome accession   NZ_CP140297
Coordinates   2767947..2768237 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain UMAF6639     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2762947..2773237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS13315 (U3P88_13315) darA 2762964..2763293 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  U3P88_RS13320 (U3P88_13320) - 2763306..2763746 (+) 441 WP_004264730.1 DUF327 family protein -
  U3P88_RS13325 (U3P88_13325) holB 2763758..2764747 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  U3P88_RS13330 (U3P88_13330) ricT 2764750..2765577 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  U3P88_RS13335 (U3P88_13335) yabA 2765592..2765951 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  U3P88_RS13340 (U3P88_13340) - 2766012..2766755 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  U3P88_RS13345 (U3P88_13345) - 2766742..2767041 (+) 300 WP_060675321.1 GIY-YIG nuclease family protein -
  U3P88_RS13350 (U3P88_13350) rsmI 2767016..2767897 (+) 882 WP_061861083.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  U3P88_RS13355 (U3P88_13355) abrB 2767947..2768237 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  U3P88_RS13360 (U3P88_13360) metG 2768721..2770712 (+) 1992 WP_060675319.1 methionine--tRNA ligase -
  U3P88_RS13365 (U3P88_13365) - 2770789..2771556 (+) 768 WP_017419495.1 TatD family hydrolase -
  U3P88_RS13370 (U3P88_13370) - 2771691..2773016 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=913556 U3P88_RS13355 WP_169510469.1 2767947..2768237(-) (abrB) [Bacillus velezensis strain UMAF6639]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=913556 U3P88_RS13355 WP_169510469.1 2767947..2768237(-) (abrB) [Bacillus velezensis strain UMAF6639]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979