Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   U3P88_RS13125 Genome accession   NZ_CP140297
Coordinates   2725431..2726543 (+) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain UMAF6639     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2720431..2731543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS13100 (U3P88_13100) rnpA 2721143..2721493 (-) 351 WP_004392944.1 ribonuclease P protein component -
  U3P88_RS13105 (U3P88_13105) rpmH 2721647..2721781 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  U3P88_RS13110 (U3P88_13110) dnaA 2722404..2723744 (+) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  U3P88_RS13115 (U3P88_13115) dnaN 2723929..2725065 (+) 1137 WP_007409909.1 DNA polymerase III subunit beta -
  U3P88_RS13120 (U3P88_13120) rlbA 2725200..2725415 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  U3P88_RS13125 (U3P88_13125) recF 2725431..2726543 (+) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  U3P88_RS13130 (U3P88_13130) - 2726561..2726806 (+) 246 WP_004392908.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  U3P88_RS13135 (U3P88_13135) gyrB 2726863..2728779 (+) 1917 WP_014720600.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  U3P88_RS13140 (U3P88_13140) gyrA 2728995..2731454 (+) 2460 WP_061861079.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=913554 U3P88_RS13125 WP_007409910.1 2725431..2726543(+) (recF) [Bacillus velezensis strain UMAF6639]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=913554 U3P88_RS13125 WP_007409910.1 2725431..2726543(+) (recF) [Bacillus velezensis strain UMAF6639]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTGTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943