Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   U3P88_RS11295 Genome accession   NZ_CP140297
Coordinates   2363477..2364622 (+) Length   381 a.a.
NCBI ID   WP_007407638.1    Uniprot ID   -
Organism   Bacillus velezensis strain UMAF6639     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2358477..2369622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS11275 (U3P88_11275) - 2359374..2359802 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  U3P88_RS11280 (U3P88_11280) - 2359956..2360468 (+) 513 Protein_2221 bacteriocin biosynthesis protein AlbG -
  U3P88_RS11285 (U3P88_11285) - 2360475..2361851 (-) 1377 WP_061860962.1 YncE family protein -
  U3P88_RS11290 (U3P88_11290) - 2361891..2363246 (-) 1356 WP_061860963.1 YncE family protein -
  U3P88_RS11295 (U3P88_11295) rapF 2363477..2364622 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  U3P88_RS11300 (U3P88_11300) phrF 2364606..2364725 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  U3P88_RS11305 (U3P88_11305) - 2364923..2365126 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  U3P88_RS11310 (U3P88_11310) - 2365140..2365343 (+) 204 WP_007407641.1 hypothetical protein -
  U3P88_RS11315 (U3P88_11315) - 2365378..2365563 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  U3P88_RS11320 (U3P88_11320) - 2365749..2366030 (+) 282 WP_061860964.1 hypothetical protein -
  U3P88_RS11325 (U3P88_11325) - 2366074..2366586 (+) 513 WP_060673881.1 stage II sporulation protein M -
  U3P88_RS11330 (U3P88_11330) - 2367177..2367395 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  U3P88_RS11335 (U3P88_11335) speB 2367563..2368435 (-) 873 WP_007407646.1 agmatinase -
  U3P88_RS11340 (U3P88_11340) speE 2368494..2369324 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45543.57 Da        Isoelectric Point: 4.5769

>NTDB_id=913549 U3P88_RS11295 WP_007407638.1 2363477..2364622(+) (rapF) [Bacillus velezensis strain UMAF6639]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=913549 U3P88_RS11295 WP_007407638.1 2363477..2364622(+) (rapF) [Bacillus velezensis strain UMAF6639]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCATAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTATTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564