Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   U3P88_RS06440 Genome accession   NZ_CP140297
Coordinates   1418916..1419668 (-) Length   250 a.a.
NCBI ID   WP_061860763.1    Uniprot ID   -
Organism   Bacillus velezensis strain UMAF6639     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413916..1424668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS06415 (U3P88_06415) mreC 1414353..1415216 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  U3P88_RS06420 (U3P88_06420) mreB 1415247..1416260 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  U3P88_RS06425 (U3P88_06425) radC 1416352..1417047 (-) 696 WP_032866595.1 DNA repair protein RadC -
  U3P88_RS06430 (U3P88_06430) - 1417079..1417648 (-) 570 WP_015417926.1 Maf family protein -
  U3P88_RS06435 (U3P88_06435) - 1417789..1418789 (-) 1001 Protein_1281 SPOR domain-containing protein -
  U3P88_RS06440 (U3P88_06440) comC 1418916..1419668 (-) 753 WP_061860763.1 A24 family peptidase Machinery gene
  U3P88_RS06445 (U3P88_06445) - 1419808..1421100 (-) 1293 WP_061860764.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  U3P88_RS06450 (U3P88_06450) - 1421159..1423801 (-) 2643 WP_061860765.1 valine--tRNA ligase -
  U3P88_RS06455 (U3P88_06455) - 1424254..1424445 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27253.96 Da        Isoelectric Point: 9.4293

>NTDB_id=913532 U3P88_RS06440 WP_061860763.1 1418916..1419668(-) (comC) [Bacillus velezensis strain UMAF6639]
MFLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=913532 U3P88_RS06440 WP_061860763.1 1418916..1419668(-) (comC) [Bacillus velezensis strain UMAF6639]
GTGTTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCTGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58