Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   U3P88_RS04000 Genome accession   NZ_CP140297
Coordinates   925024..925632 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain UMAF6639     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 920024..930632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS03960 (U3P88_03960) - 921077..921583 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  U3P88_RS03965 (U3P88_03965) - 921722..922135 (+) 414 WP_039254739.1 hypothetical protein -
  U3P88_RS03970 (U3P88_03970) - 922165..922599 (-) 435 WP_053573252.1 YppG family protein -
  U3P88_RS03975 (U3P88_03975) - 922786..922968 (+) 183 WP_003153532.1 YppF family protein -
  U3P88_RS03980 (U3P88_03980) - 923007..923375 (-) 369 WP_007409492.1 YppE family protein -
  U3P88_RS03985 (U3P88_03985) - 923421..923666 (-) 246 WP_012117836.1 DUF5446 family protein -
  U3P88_RS03990 (U3P88_03990) sspM 923872..923976 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  U3P88_RS03995 (U3P88_03995) - 924020..924982 (-) 963 WP_015417701.1 DUF2515 domain-containing protein -
  U3P88_RS04000 (U3P88_04000) recU 925024..925632 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  U3P88_RS04005 (U3P88_04005) - 925671..928448 (+) 2778 WP_060674154.1 PBP1A family penicillin-binding protein -
  U3P88_RS04010 (U3P88_04010) - 928607..929757 (+) 1151 WP_094031235.1 IS3 family transposase -
  U3P88_RS04015 (U3P88_04015) - 929815..930306 (-) 492 WP_060674317.1 YpoC family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=913515 U3P88_RS04000 WP_012117837.1 925024..925632(+) (recU) [Bacillus velezensis strain UMAF6639]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=913515 U3P88_RS04000 WP_012117837.1 925024..925632(+) (recU) [Bacillus velezensis strain UMAF6639]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCTCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891