Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   U3P88_RS00555 Genome accession   NZ_CP140297
Coordinates   110281..110745 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain UMAF6639     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 105281..115745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS00535 (U3P88_00535) - 105762..107582 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  U3P88_RS00540 (U3P88_00540) - 107607..108776 (-) 1170 WP_015417364.1 aminotransferase A -
  U3P88_RS00545 (U3P88_00545) - 108977..109138 (-) 162 WP_007409608.1 hypothetical protein -
  U3P88_RS00550 (U3P88_00550) cheV 109327..110238 (+) 912 WP_039251615.1 chemotaxis protein CheV -
  U3P88_RS00555 (U3P88_00555) kre 110281..110745 (-) 465 WP_003154622.1 YkyB family protein Regulator
  U3P88_RS00560 (U3P88_00560) - 110868..112160 (-) 1293 WP_015239757.1 MFS transporter -
  U3P88_RS00565 (U3P88_00565) - 112236..112730 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  U3P88_RS00570 (U3P88_00570) - 112805..113668 (-) 864 WP_060675295.1 metallophosphoesterase -
  U3P88_RS00575 (U3P88_00575) fadH 113813..114577 (+) 765 WP_061861423.1 2,4-dienoyl-CoA reductase -
  U3P88_RS00580 (U3P88_00580) - 114691..115239 (+) 549 WP_031378778.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=913507 U3P88_RS00555 WP_003154622.1 110281..110745(-) (kre) [Bacillus velezensis strain UMAF6639]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=913507 U3P88_RS00555 WP_003154622.1 110281..110745(-) (kre) [Bacillus velezensis strain UMAF6639]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929