Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L6432_RS16445 Genome accession   NZ_AP025339
Coordinates   3286829..3288208 (+) Length   459 a.a.
NCBI ID   WP_020449839.1    Uniprot ID   A0AAW6KF37
Organism   Bacillus paralicheniformis strain J25TS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3281829..3293208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS16425 - 3282196..3282660 (+) 465 WP_020449835.1 CtsR family transcriptional regulator -
  L6432_RS16430 - 3282675..3283229 (+) 555 WP_003178271.1 UvrB/UvrC motif-containing protein -
  L6432_RS16435 - 3283229..3284320 (+) 1092 WP_020449837.1 protein arginine kinase -
  L6432_RS16440 clpC 3284317..3286749 (+) 2433 WP_020449838.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  L6432_RS16445 radA 3286829..3288208 (+) 1380 WP_020449839.1 DNA repair protein RadA Machinery gene
  L6432_RS16450 disA 3288212..3289288 (+) 1077 WP_020449840.1 DNA integrity scanning diadenylate cyclase DisA -
  L6432_RS16455 - 3289420..3290508 (+) 1089 WP_009330350.1 PIN/TRAM domain-containing protein -
  L6432_RS16460 ispD 3290525..3291220 (+) 696 WP_020449841.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  L6432_RS16465 ispF 3291213..3291689 (+) 477 WP_020449842.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49848.28 Da        Isoelectric Point: 7.4339

>NTDB_id=91350 L6432_RS16445 WP_020449839.1 3286829..3288208(+) (radA) [Bacillus paralicheniformis strain J25TS1]
MAKTKTKFICHSCGYESAKWMGKCPGCGTWNTMVEETIKKPAANRRTAFSHSVQTVQKPSPLTSIETTEEPRIKTKLGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=91350 L6432_RS16445 WP_020449839.1 3286829..3288208(+) (radA) [Bacillus paralicheniformis strain J25TS1]
ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGTTACGAATCCGCCAAGTGGATGGGGAAGTGCCCCGGATG
CGGCACATGGAATACCATGGTGGAAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCACATTCCGTTC
AAACGGTGCAAAAGCCTTCACCTCTCACTTCAATCGAAACAACAGAAGAGCCGCGAATTAAAACGAAACTGGGCGAATTC
AACCGCGTCTTGGGAAACGGTATTGTCAAAGGTTCACTCGTTTTAATCGGAGGCGATCCCGGCATCGGGAAATCAACCTT
GCTGCTTCAAGTATCTGCCCAGCTCGCTGATTCAAAAGAAAATGTCCTGTACATCTCAGGTGAAGAATCGGTCAAGCAGA
CAAAGCTGAGAGCAGACCGTCTAGGCATCAACAGTCCCACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAATCCATCATTCGTGGTGGTTGATTCGATTCAAACCGTTTACCAAAGTGATATTACATCTGC
TCCAGGCAGCGTGTCCCAGGTCAGGGAATGCACCGCTGAGCTGATGAGAATTGCAAAAACAAAAGGGATTCCGATATTTA
TCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGACTTCTGGAACATATGGTCGACACCGTCCTTTATTTT
GAAGGTGAGCGGCATCATACATTTCGGATTTTAAGAGCCGTCAAAAACCGGTTTGGATCAACGAATGAAATGGGAATCTT
TGAAATGAGGGAAGAGGGCCTGACAGAAGTGCTGAATCCGTCGGAGATCTTTCTCGAAGAGCGCTCGGCTGGAGCAGCCG
GCTCGAGTGTCGTGGCTTCAATGGAAGGCACGAGGCCGGTCTTAGTAGAGATTCAGGCGCTGATTTCCCCGACGAGTTTT
GGAAATCCGCGCAGGATGGCAACCGGAATTGATCATAACCGCGTCTCATTGCTGATGGCGGTTTTAGAAAAAAGGGTGGG
GCTGCTGCTGCAAAATCAAGACGCCTATTTAAAAGTCGCCGGCGGCGTCAAGCTGGACGAGCCGGCGATCGACCTCGCCG
TTGCGGTGAGCATCGCCTCAAGCTTCAGAGACACCCCGCCTCATCCGACGGATTGTTTTATCGGCGAAGTCGGCTTGACA
GGGGAAGTCCGCAGAGTATCAAGGATAGAACAGAGGGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCC
TTCTGCAAATGTGGAAGGATGGACAAAGCCGAAAGGAATTGAAGTCGTCGGCGTTGAAAATGTAGCTGAGGCCCTTCGAG
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

91.048

99.782

0.908
  radA Streptococcus mitis NCTC 12261

62.031

98.693

0.612
  radA Streptococcus pneumoniae Rx1

62.031

98.693

0.612
  radA Streptococcus pneumoniae D39

62.031

98.693

0.612
  radA Streptococcus pneumoniae R6

62.031

98.693

0.612
  radA Streptococcus pneumoniae TIGR4

62.031

98.693

0.612
  radA Streptococcus mitis SK321

61.81

98.693

0.61

Multiple sequence alignment