Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   L6432_RS15865 Genome accession   NZ_AP025339
Coordinates   3179557..3180669 (+) Length   370 a.a.
NCBI ID   WP_003178089.1    Uniprot ID   A0A415J9T0
Organism   Bacillus paralicheniformis strain J25TS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3174557..3185669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS15840 rnpA 3175285..3175644 (-) 360 WP_020453656.1 ribonuclease P protein component -
  L6432_RS15845 rpmH 3175729..3175863 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  L6432_RS15850 dnaA 3176503..3177843 (+) 1341 WP_009330034.1 chromosomal replication initiator protein DnaA -
  L6432_RS15855 dnaN 3178021..3179157 (+) 1137 WP_020449764.1 DNA polymerase III subunit beta -
  L6432_RS15860 yaaA 3179325..3179540 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  L6432_RS15865 recF 3179557..3180669 (+) 1113 WP_003178089.1 DNA replication/repair protein RecF Machinery gene
  L6432_RS15870 remB 3180687..3180929 (+) 243 WP_020449765.1 extracellular matrix regulator RemB -
  L6432_RS15875 gyrB 3180990..3182903 (+) 1914 WP_020449766.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  L6432_RS15880 gyrA 3183093..3185567 (+) 2475 WP_043054015.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=91346 L6432_RS15865 WP_003178089.1 3179557..3180669(+) (recF) [Bacillus paralicheniformis strain J25TS1]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=91346 L6432_RS15865 WP_003178089.1 3179557..3180669(+) (recF) [Bacillus paralicheniformis strain J25TS1]
TTGTATATCCAAAATCTAACATTATCGTCTTACCGTAATTATGAACGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCCAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTTAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCAGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGCTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGTCAGCAGCGAACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATACCCGATTTTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACTTTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886

Multiple sequence alignment