Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   U2873_RS12025 Genome accession   NZ_CP140276
Coordinates   2333331..2334101 (-) Length   256 a.a.
NCBI ID   WP_008342406.1    Uniprot ID   A0A9X0FVJ5
Organism   Bacillus altitudinis strain F7     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2328331..2339101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS12005 (U2873_12005) - 2328424..2329245 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  U2873_RS12010 (U2873_12010) - 2329271..2329909 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  U2873_RS12015 (U2873_12015) glyS 2330076..2332121 (-) 2046 WP_322535873.1 glycine--tRNA ligase subunit beta -
  U2873_RS12020 (U2873_12020) glyQ 2332114..2333001 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  U2873_RS12025 (U2873_12025) recO 2333331..2334101 (-) 771 WP_008342406.1 DNA repair protein RecO Machinery gene
  U2873_RS12030 (U2873_12030) - 2334137..2334280 (-) 144 WP_008342408.1 YqzL family protein -
  U2873_RS12035 (U2873_12035) era 2334428..2335333 (-) 906 WP_007501305.1 GTPase Era -
  U2873_RS12040 (U2873_12040) - 2335326..2335724 (-) 399 WP_008342410.1 cytidine deaminase -
  U2873_RS12045 (U2873_12045) - 2335837..2336223 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  U2873_RS12050 (U2873_12050) ybeY 2336201..2336680 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  U2873_RS12055 (U2873_12055) - 2336681..2338795 (-) 2115 WP_370539207.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29317.03 Da        Isoelectric Point: 8.4335

>NTDB_id=913435 U2873_RS12025 WP_008342406.1 2333331..2334101(-) (recO) [Bacillus altitudinis strain F7]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICKQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=913435 U2873_RS12025 WP_008342406.1 2333331..2334101(-) (recO) [Bacillus altitudinis strain F7]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAAGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758