Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   U2873_RS09125 Genome accession   NZ_CP140276
Coordinates   1792216..1792596 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain F7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1787216..1797596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS09115 (U2873_09115) - 1788939..1789847 (+) 909 WP_048001486.1 serine protease -
  U2873_RS09120 (U2873_09120) - 1789994..1791988 (+) 1995 WP_048001485.1 glycosyltransferase family 39 protein -
  U2873_RS09125 (U2873_09125) nucA/comI 1792216..1792596 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U2873_RS09130 (U2873_09130) - 1792740..1793588 (+) 849 WP_017359585.1 STAS domain-containing protein -
  U2873_RS09135 (U2873_09135) - 1793702..1794852 (+) 1151 WP_322536409.1 IS3 family transposase -
  U2873_RS09140 (U2873_09140) - 1794910..1795452 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  U2873_RS09145 (U2873_09145) - 1795749..1796192 (+) 444 WP_008343821.1 hypothetical protein -
  U2873_RS09150 (U2873_09150) lexA 1796240..1796860 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  U2873_RS09155 (U2873_09155) yneA 1797020..1797331 (+) 312 WP_007499348.1 cell division suppressor protein YneA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=913428 U2873_RS09125 WP_224559893.1 1792216..1792596(+) (nucA/comI) [Bacillus altitudinis strain F7]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=913428 U2873_RS09125 WP_224559893.1 1792216..1792596(+) (nucA/comI) [Bacillus altitudinis strain F7]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556