Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   U2873_RS05280 Genome accession   NZ_CP140276
Coordinates   1047981..1048931 (+) Length   316 a.a.
NCBI ID   WP_017366964.1    Uniprot ID   A0A9X0FWU4
Organism   Bacillus altitudinis strain F7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1042981..1053931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS05260 (U2873_05260) - 1044216..1044698 (+) 483 WP_007499155.1 hypothetical protein -
  U2873_RS05265 (U2873_05265) - 1044729..1046168 (-) 1440 WP_169476044.1 PLP-dependent aminotransferase family protein -
  U2873_RS05270 (U2873_05270) - 1046312..1047481 (+) 1170 WP_017360232.1 MFS transporter -
  U2873_RS05275 (U2873_05275) - 1047544..1047822 (+) 279 WP_025207101.1 barstar family protein -
  U2873_RS05280 (U2873_05280) ceuB 1047981..1048931 (+) 951 WP_017366964.1 ABC transporter permease Machinery gene
  U2873_RS05285 (U2873_05285) - 1048924..1049874 (+) 951 WP_008348643.1 iron chelate uptake ABC transporter family permease subunit -
  U2873_RS05290 (U2873_05290) - 1049865..1050623 (+) 759 WP_056705126.1 ABC transporter ATP-binding protein -
  U2873_RS05295 (U2873_05295) - 1050646..1051590 (+) 945 WP_241511834.1 siderophore ABC transporter substrate-binding protein -
  U2873_RS05300 (U2873_05300) - 1051730..1052686 (+) 957 WP_072368152.1 LCP family protein -
  U2873_RS05305 (U2873_05305) - 1052721..1053155 (-) 435 WP_035700181.1 hypothetical protein -
  U2873_RS05310 (U2873_05310) - 1053242..1053604 (-) 363 WP_017360224.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34945.28 Da        Isoelectric Point: 9.7475

>NTDB_id=913410 U2873_RS05280 WP_017366964.1 1047981..1048931(+) (ceuB) [Bacillus altitudinis strain F7]
MKLYQLSLLFVCLACASLFVGVQDLSLLQLFHLSDEQMNTLFSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILTAMLVFTQASPLMKMAIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=913410 U2873_RS05280 WP_017366964.1 1047981..1048931(+) (ceuB) [Bacillus altitudinis strain F7]
ATGAAGTTGTACCAATTAAGTTTGTTGTTTGTGTGTTTGGCATGTGCGTCGCTGTTTGTCGGAGTACAGGACCTGTCTCT
TTTACAGTTGTTTCATCTATCAGATGAACAAATGAACACCTTATTTTCAAGTCGCATCCCGCGGCTGATGAGTATTGTGC
TTGCTGGCATGAGCCTGAGCTTATGCGGTTTTATCATGCAAAGCATGACGAGAAATAAATTTGTCTCTCCAACGACTGCA
GGAACAATGGATTGGGCCAAGCTGGGTATTTTAACCGCCATGCTTGTTTTTACACAGGCAAGCCCGCTGATGAAAATGGC
GATTGCGTTTTTATTTACGTTAGCTGGCAATCTATTATTCTTAAAAATTTTACGCCATATTAAGGTGAACGATACGATCT
ACGTACCGTTAGTCGGCTTAATGTTTGGCGGAATTGTCAGTTCAATTTCCACGTTTATAGCCTATAAATATGATTTGATC
CAAAACGTATCCGCATGGCTGCAAGGGGATTTTTCTCTTATTGTTCAGGGACGTTATGAACTGCTCTATGTGAGTGTTCC
TCTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCTGGTATGGGTGAGAGCTTTGCCGTCAATTTAGGTT
TAACGTATAAACGTGTCATGGCAGTTGGTTTGGTGATTGTTTCGATGATTACTTCTGTAACGATTTTGACTGTTGGCATG
CTGCCATTCCTTGGCTTAATCATTCCGAATATTGTATCGATCTACCGAGGGGATCACTTGAAAAAGAGCCTGCCGCATAC
GGCTTTATTAGGGGCCATTTTTGTGCTCATATGTGACGTACTCGGACGGGTGATCATTTATCCATATGAAATATCTGTCG
GGCTTATGGTCGGCATCATTGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAGCGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52

94.937

0.494