Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK05_RS05240 Genome accession   NZ_AP027877
Coordinates   1065080..1065595 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2018-05-2CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060080..1070595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK05_RS05195 (VEE46_10130) csrA 1060897..1061082 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK05_RS05225 (VEE46_10140) yqaB 1062310..1062876 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK05_RS05230 (VEE46_10150) yqaA 1062873..1063301 (+) 429 WP_338388138.1 YqaA family protein -
  AABK05_RS05235 (VEE46_10160) gshA 1063374..1064930 (+) 1557 WP_338388139.1 glutamate--cysteine ligase -
  AABK05_RS05240 (VEE46_10170) luxS 1065080..1065595 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK05_RS05245 (VEE46_10180) - 1065644..1066756 (-) 1113 WP_338388140.1 AAA family ATPase -
  AABK05_RS05250 (VEE46_10190) - 1066753..1067460 (-) 708 WP_105462696.1 RNA ligase family protein -
  AABK05_RS05255 (VEE46_10200) emrB 1067718..1069256 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK05_RS05260 (VEE46_10210) emrA 1069273..1070445 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=91341 AABK05_RS05240 WP_001130211.1 1065080..1065595(+) (luxS) [Escherichia coli strain 2018-05-2CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=91341 AABK05_RS05240 WP_001130211.1 1065080..1065595(+) (luxS) [Escherichia coli strain 2018-05-2CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment