Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   U2873_RS05250 Genome accession   NZ_CP140276
Coordinates   1042001..1042579 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain F7     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1037001..1047579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS05230 (U2873_05230) - 1037494..1038855 (-) 1362 WP_370539267.1 globin-coupled sensor protein -
  U2873_RS05235 (U2873_05235) - 1038881..1040413 (-) 1533 WP_129548214.1 FAD-dependent oxidoreductase -
  U2873_RS05240 (U2873_05240) - 1040556..1041416 (+) 861 WP_017366957.1 SDR family oxidoreductase -
  U2873_RS05245 (U2873_05245) - 1041475..1041711 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  U2873_RS05250 (U2873_05250) comK 1042001..1042579 (+) 579 WP_017366958.1 competence protein ComK Regulator
  U2873_RS05255 (U2873_05255) - 1042723..1043829 (+) 1107 WP_129548215.1 D-TA family PLP-dependent enzyme -
  U2873_RS05260 (U2873_05260) - 1044216..1044698 (+) 483 WP_007499155.1 hypothetical protein -
  U2873_RS05265 (U2873_05265) - 1044729..1046168 (-) 1440 WP_169476044.1 PLP-dependent aminotransferase family protein -
  U2873_RS05270 (U2873_05270) - 1046312..1047481 (+) 1170 WP_017360232.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=913409 U2873_RS05250 WP_017366958.1 1042001..1042579(+) (comK) [Bacillus altitudinis strain F7]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=913409 U2873_RS05250 WP_017366958.1 1042001..1042579(+) (comK) [Bacillus altitudinis strain F7]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTATGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615