Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   U2873_RS00260 Genome accession   NZ_CP140276
Coordinates   48898..49188 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain F7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 43898..54188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS00220 (U2873_00220) - 43931..44260 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  U2873_RS00225 (U2873_00225) - 44273..44713 (+) 441 WP_008341898.1 YaaR family protein -
  U2873_RS00230 (U2873_00230) holB 44725..45714 (+) 990 WP_017359329.1 DNA polymerase III subunit delta' -
  U2873_RS00235 (U2873_00235) - 45717..46544 (+) 828 WP_007496230.1 stage 0 sporulation family protein -
  U2873_RS00240 (U2873_00240) yabA 46559..46912 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  U2873_RS00245 (U2873_00245) - 46968..47711 (+) 744 WP_322536153.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  U2873_RS00250 (U2873_00250) - 47698..47997 (+) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  U2873_RS00255 (U2873_00255) rsmI 47972..48853 (+) 882 WP_146271847.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  U2873_RS00260 (U2873_00260) abrB 48898..49188 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  U2873_RS00265 (U2873_00265) metG 49708..51708 (+) 2001 WP_322536154.1 methionine--tRNA ligase -
  U2873_RS00270 (U2873_00270) - 51790..52557 (+) 768 WP_217816660.1 TatD family hydrolase -
  U2873_RS00275 (U2873_00275) - 52802..54004 (+) 1203 WP_322536155.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=913400 U2873_RS00260 WP_087975202.1 48898..49188(-) (abrB) [Bacillus altitudinis strain F7]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=913400 U2873_RS00260 WP_087975202.1 48898..49188(-) (abrB) [Bacillus altitudinis strain F7]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938