Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   U0M98_RS08125 Genome accession   NZ_CP140267
Coordinates   1361218..1361592 (+) Length   124 a.a.
NCBI ID   WP_223269005.1    Uniprot ID   -
Organism   Priestia megaterium strain CACC119     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1356218..1366592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0M98_RS08105 - 1356708..1357379 (-) 672 WP_043978471.1 response regulator transcription factor -
  U0M98_RS08110 - 1357705..1358523 (+) 819 WP_028411023.1 squalene/phytoene synthase family protein -
  U0M98_RS08115 - 1358559..1360508 (-) 1950 WP_165575892.1 FUSC family protein -
  U0M98_RS08120 - 1360665..1360925 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  U0M98_RS08125 nucA/comI 1361218..1361592 (+) 375 WP_223269005.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U0M98_RS08130 comJ 1361628..1362035 (+) 408 WP_043978463.1 competence protein ComJ -
  U0M98_RS08135 - 1362137..1362727 (-) 591 WP_237074202.1 CPBP family intramembrane glutamic endopeptidase -
  U0M98_RS08140 helD 1363128..1365446 (-) 2319 WP_322552365.1 RNA polymerase recycling motor HelD -
  U0M98_RS08145 - 1365691..1365816 (-) 126 WP_016765178.1 hypothetical protein -
  U0M98_RS08150 - 1365956..1366471 (-) 516 WP_043978456.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13661.90 Da        Isoelectric Point: 4.2601

>NTDB_id=913360 U0M98_RS08125 WP_223269005.1 1361218..1361592(+) (nucA/comI) [Priestia megaterium strain CACC119]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=913360 U0M98_RS08125 WP_223269005.1 1361218..1361592(+) (nucA/comI) [Priestia megaterium strain CACC119]
ATGGGGCATGCGGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAATTATGATGCGACACTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCGATTGCCGCTGGGCACTCTTCCGTTTGTACAATTGATCGCGACG
GTGCTGAAGCGAACCGAGAAGAATCCCTGAAAGGATATCCGACAAAAACAGGTTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

95.968

0.645