Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   U0M98_RS05200 Genome accession   NZ_CP140267
Coordinates   863743..864165 (+) Length   140 a.a.
NCBI ID   WP_013057949.1    Uniprot ID   A0A8D3X0F8
Organism   Priestia megaterium strain CACC119     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 858743..869165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0M98_RS05175 - 859075..859908 (-) 834 WP_322552254.1 AraC family transcriptional regulator -
  U0M98_RS05180 - 860131..860952 (+) 822 WP_074895082.1 sensor histidine kinase -
  U0M98_RS05185 - 860953..861594 (+) 642 WP_098248051.1 response regulator transcription factor -
  U0M98_RS05190 - 861726..863108 (+) 1383 WP_322552255.1 PepSY domain-containing protein -
  U0M98_RS05195 - 863138..863602 (+) 465 WP_043981377.1 FixH family protein -
  U0M98_RS05200 nucA/comI 863743..864165 (+) 423 WP_013057949.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U0M98_RS05205 - 864306..864659 (+) 354 WP_225049451.1 DUF1516 family protein -
  U0M98_RS05210 - 864700..865293 (-) 594 WP_097822801.1 hypothetical protein -
  U0M98_RS05215 - 865448..866155 (-) 708 WP_241771379.1 TetR/AcrR family transcriptional regulator -
  U0M98_RS05220 - 866127..867407 (-) 1281 WP_322552256.1 glycosyltransferase -
  U0M98_RS05225 - 867703..868248 (+) 546 WP_060745312.1 GNAT family N-acetyltransferase -
  U0M98_RS05230 - 868397..868882 (-) 486 WP_043981373.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15329.17 Da        Isoelectric Point: 4.4990

>NTDB_id=913356 U0M98_RS05200 WP_013057949.1 863743..864165(+) (nucA/comI) [Priestia megaterium strain CACC119]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=913356 U0M98_RS05200 WP_013057949.1 863743..864165(+) (nucA/comI) [Priestia megaterium strain CACC119]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATTGACCGAGACGGGGCTGAGGAAAACCGCCGTGAGTCTTTAAAA
GGTATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCTGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATCTCCCATCAAGTAGACGAGTTTCCTGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507