Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   U0M98_RS04925 Genome accession   NZ_CP140267
Coordinates   820963..821913 (-) Length   316 a.a.
NCBI ID   WP_043981405.1    Uniprot ID   -
Organism   Priestia megaterium strain CACC119     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 815963..826913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0M98_RS04895 - 816392..816646 (+) 255 WP_043981409.1 hypothetical protein -
  U0M98_RS04900 - 816707..816847 (-) 141 WP_013057884.1 hypothetical protein -
  U0M98_RS04905 - 817107..817961 (-) 855 WP_013057886.1 manganese catalase family protein -
  U0M98_RS04910 - 818291..819247 (-) 957 WP_043981408.1 siderophore ABC transporter substrate-binding protein -
  U0M98_RS04915 - 819271..820029 (-) 759 WP_237074394.1 ABC transporter ATP-binding protein -
  U0M98_RS04920 - 820023..820970 (-) 948 WP_322552245.1 iron chelate uptake ABC transporter family permease subunit -
  U0M98_RS04925 ceuB 820963..821913 (-) 951 WP_043981405.1 ABC transporter permease Machinery gene
  U0M98_RS04930 - 822467..823273 (-) 807 WP_097822769.1 cell wall hydrolase -
  U0M98_RS04935 - 823636..823890 (+) 255 WP_013057893.1 hypothetical protein -
  U0M98_RS04940 - 823972..824136 (-) 165 WP_013057894.1 hypothetical protein -
  U0M98_RS04945 - 824449..824793 (-) 345 WP_013057895.1 hypothetical protein -
  U0M98_RS04950 - 824836..825867 (-) 1032 WP_097822770.1 zinc-binding dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35009.22 Da        Isoelectric Point: 9.8785

>NTDB_id=913355 U0M98_RS04925 WP_043981405.1 820963..821913(-) (ceuB) [Priestia megaterium strain CACC119]
MKFYQLILVFAVLAVSSLFIGVQDLSATDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYLYADKFTVAGMGESFSINLGMKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPYTALLGAVFVLACDILGRVIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=913355 U0M98_RS04925 WP_043981405.1 820963..821913(-) (ceuB) [Priestia megaterium strain CACC119]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTAGCAGTTTCGTCTCTTTTTATAGGCGTACAAGATCTGTCAGC
GACGGATCTCTTTCATTTAACAAAAGAAGAAAGTCAAACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGCATTATTA
TGGCAGGAATGAGCCTTAGTATTTGCGGATTAATTATGCAGCAAATTACGCGAAATAAGTTTGTATCTCCAACAACGGCA
GGAACGATGGACTGGGCAAGACTTGGTGTGTTGATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTCATTTTCTCACTGGCGGGCAATCTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCGCTAGTCGGTTTAATGCTCGGCAGTATCGTAAGTTCCTTAGCTACCTTCATCGCCTACAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTAGTAGTCAAAGGGAGATATGAACTTTTATACCTGAGTATACC
GCTCGTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGCA
TGAAATACAAACAAATCGTAAACATTGGATTAGTCATTGTTTCGCTTATTACGTCGATTACGATTTTGACCGTTGGCATG
CTGCCTTTTTTAGGATTAATCATTCCAAATATCGTATCGATTTACCGTGGAGATCATTTGCGAAAAAGCCTGCCTTATAC
AGCGCTGCTTGGAGCTGTGTTCGTACTGGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCTTATGAAATCTCTATTG
GGCTAATGGTCGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.333

94.937

0.506