Detailed information NTG0913301

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABXJ16_RS03405
• Genome accession: NZ_CP159632
• Coordinates: 733615..734607 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Z135-6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 728615..739607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXJ16_RS03385 (ABXJ16_03385)	ygbM	729253..730029 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
ABXJ16_RS03390 (ABXJ16_03390)	ygbN	730118..731482 (+)	1365	WP_000104433.1	GntP family transporter	-
ABXJ16_RS03395 (ABXJ16_03395)	-	731625..732668 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ABXJ16_RS03400 (ABXJ16_03400)	-	732893..733444 (+)	552	WP_001179444.1	flavodoxin family protein	-
ABXJ16_RS03405 (ABXJ16_03405)	rpoS	733615..734607 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABXJ16_RS03410 (ABXJ16_03410)	nlpD	734670..735764 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ABXJ16_RS03415 (ABXJ16_03415)	pcm	735949..736575 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABXJ16_RS03420 (ABXJ16_03420)	surE	736569..737330 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABXJ16_RS03425 (ABXJ16_03425)	truD	737311..738360 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ABXJ16_RS03430 (ABXJ16_03430)	ispF	738357..738836 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABXJ16_RS03435 (ABXJ16_03435)	ispD	738836..739546 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=913301 ABXJ16_RS03405 WP_000081550.1 733615..734607(-) (rpoS) [Escherichia coli strain Z135-6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=913301 ABXJ16_RS03405 WP_000081550.1 733615..734607(-) (rpoS) [Escherichia coli strain Z135-6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715