Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   SR852_RS19380 Genome accession   NZ_CP140161
Coordinates   3723397..3723975 (-) Length   192 a.a.
NCBI ID   WP_003180354.1    Uniprot ID   A0A1Y0YMJ8
Organism   Bacillus licheniformis strain ATCC 14580     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3718397..3728975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS19360 (SR852_19360) - 3719757..3721532 (+) 1776 WP_003180361.1 S8 family peptidase -
  SR852_RS19365 (SR852_19365) lepB 3721687..3722205 (-) 519 WP_003180360.1 signal peptidase I -
  SR852_RS19370 (SR852_19370) - 3722218..3722829 (-) 612 WP_003180359.1 TVP38/TMEM64 family protein -
  SR852_RS19375 (SR852_19375) - 3723038..3723403 (+) 366 WP_003180357.1 hypothetical protein -
  SR852_RS19380 (SR852_19380) comK 3723397..3723975 (-) 579 WP_003180354.1 competence protein ComK Regulator
  SR852_RS19385 (SR852_19385) - 3724248..3724481 (+) 234 WP_003180353.1 IDEAL domain-containing protein -
  SR852_RS19390 (SR852_19390) - 3724547..3725404 (-) 858 WP_003180352.1 SDR family oxidoreductase -
  SR852_RS19395 (SR852_19395) - 3725524..3727074 (+) 1551 WP_044051823.1 FAD-dependent oxidoreductase -
  SR852_RS22015 - 3727181..3727714 (+) 534 Protein_3792 protoglobin family protein -
  SR852_RS22020 - 3727979..3728473 (+) 495 WP_369878922.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22432.65 Da        Isoelectric Point: 8.6274

>NTDB_id=913258 SR852_RS19380 WP_003180354.1 3723397..3723975(-) (comK) [Bacillus licheniformis strain ATCC 14580]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSISSFENQVYRTAWLRTKFIDRIEGN
PMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=913258 SR852_RS19380 WP_003180354.1 3723397..3723975(-) (comK) [Bacillus licheniformis strain ATCC 14580]
ATGAGCACAGAGGATATGACAAAGGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTTGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAAATTATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAACATTTTTCTTTTCCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCTCATCTTTCGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACAGGATTGAAGGAAAC
CCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAAGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YMJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672