Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   SR852_RS16700 Genome accession   NZ_CP140161
Coordinates   3245196..3245786 (-) Length   196 a.a.
NCBI ID   WP_003181328.1    Uniprot ID   A0A1Y0YEF8
Organism   Bacillus licheniformis strain ATCC 14580     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3240196..3250786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS16675 (SR852_16675) mobB 3240428..3240955 (-) 528 WP_003181336.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  SR852_RS16680 (SR852_16680) glp 3240922..3242214 (-) 1293 WP_003181335.1 gephyrin-like molybdotransferase Glp -
  SR852_RS16685 (SR852_16685) - 3242234..3243247 (-) 1014 WP_011197943.1 molybdopterin-synthase adenylyltransferase MoeB -
  SR852_RS16690 (SR852_16690) mobA 3243353..3243940 (-) 588 WP_003181331.1 molybdenum cofactor guanylyltransferase -
  SR852_RS16695 (SR852_16695) - 3244093..3245049 (+) 957 WP_009328583.1 hypothetical protein -
  SR852_RS16700 (SR852_16700) rok 3245196..3245786 (-) 591 WP_003181328.1 transcriptional regulator Rok Regulator
  SR852_RS16705 (SR852_16705) - 3246334..3246792 (-) 459 WP_003181327.1 TlpA family protein disulfide reductase -
  SR852_RS16710 (SR852_16710) ahpA 3246874..3247416 (-) 543 WP_003181325.1 biofilm-specific peroxidase AhpA -
  SR852_RS16715 (SR852_16715) - 3247711..3247956 (-) 246 WP_003181323.1 YkuS family protein -
  SR852_RS16720 (SR852_16720) - 3248019..3249143 (-) 1125 WP_003181321.1 N-acetyldiaminopimelate deacetylase -
  SR852_RS16725 (SR852_16725) dapD 3249213..3249923 (-) 711 WP_003181319.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  SR852_RS16730 (SR852_16730) - 3250029..3250481 (-) 453 WP_011197942.1 flavodoxin -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22665.62 Da        Isoelectric Point: 9.9960

>NTDB_id=913245 SR852_RS16700 WP_003181328.1 3245196..3245786(-) (rok) [Bacillus licheniformis strain ATCC 14580]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRPERKTESLPVLAELAAQEMKSYQQQQ
QQQPQASQKNQQQTSPQTSSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPN
MTTFMQSLIKMYPEVKKPYRGQYILEGEISTETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=913245 SR852_RS16700 WP_003181328.1 3245196..3245786(-) (rok) [Bacillus licheniformis strain ATCC 14580]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGCTGAACGAGGCTGAAGTTAAGGTGATTAGGGAGTATCA
AATTGAGCGGGATAACATATATGCAAAGCTGCGTGAATTGGATCGTCCATCCAGCTTTAATGATACAAAAAAAGATTTTC
GCCCGGAGCGTAAAACTGAATCTCTCCCTGTTTTAGCTGAATTGGCTGCACAGGAGATGAAGAGCTACCAGCAACAGCAG
CAACAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCTCCGCAAACCTCCTCACTGCCTGCCGGAATTCCAGA
TGGAACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAAAATTGCGTGAAGCGGCGATTAAAACAT
TAAAACGCCATAATGCGGCCATCAAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGATCCCTAAT
ATGACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGG
TGAGATTTCTACTGAGACAGAGCAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YEF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.77

97.449

0.816