Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SR852_RS16570 Genome accession   NZ_CP140161
Coordinates   3220654..3220941 (-) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus licheniformis strain ATCC 14580     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3215654..3225941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS16555 (SR852_16555) ade 3216573..3218294 (-) 1722 WP_011197948.1 adenine deaminase -
  SR852_RS16560 (SR852_16560) - 3218422..3219084 (-) 663 WP_003181388.1 potassium channel family protein -
  SR852_RS16565 (SR852_16565) - 3219149..3220486 (-) 1338 WP_011197947.1 ATP-binding protein -
  SR852_RS16570 (SR852_16570) abrB 3220654..3220941 (-) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SR852_RS16575 (SR852_16575) mreBH 3221248..3222255 (+) 1008 WP_003181381.1 rod-share determining protein MreBH -
  SR852_RS16580 (SR852_16580) - 3222329..3222460 (+) 132 WP_003181378.1 protein YkpC -
  SR852_RS16585 (SR852_16585) - 3222551..3223783 (+) 1233 WP_011197946.1 aminopeptidase -
  SR852_RS16590 (SR852_16590) - 3223921..3224295 (-) 375 WP_003181373.1 YybH family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=913244 SR852_RS16570 WP_003181383.1 3220654..3220941(-) (abrB) [Bacillus licheniformis strain ATCC 14580]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=913244 SR852_RS16570 WP_003181383.1 3220654..3220941(-) (abrB) [Bacillus licheniformis strain ATCC 14580]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537