Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   SR852_RS11710 Genome accession   NZ_CP140161
Coordinates   2293072..2293407 (-) Length   111 a.a.
NCBI ID   WP_006637528.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 14580     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2288072..2298407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS11665 (SR852_11665) comGD 2288349..2288786 (+) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  SR852_RS11670 (SR852_11670) comGE 2288770..2289117 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  SR852_RS11675 (SR852_11675) comGF 2289143..2289514 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF -
  SR852_RS11680 (SR852_11680) comGG 2289527..2289892 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  SR852_RS11685 (SR852_11685) - 2289981..2290163 (+) 183 WP_003183456.1 YqzE family protein -
  SR852_RS11690 (SR852_11690) - 2290193..2290513 (-) 321 WP_003183454.1 YqzG/YhdC family protein -
  SR852_RS11695 (SR852_11695) tapA 2290790..2291518 (+) 729 WP_011198112.1 amyloid fiber anchoring/assembly protein TapA -
  SR852_RS11700 (SR852_11700) sipW 2291515..2292099 (+) 585 WP_003183449.1 signal peptidase I SipW -
  SR852_RS11705 (SR852_11705) tasA 2292173..2292967 (+) 795 WP_003183447.1 biofilm matrix protein TasA -
  SR852_RS11710 (SR852_11710) sinR 2293072..2293407 (-) 336 WP_006637528.1 transcriptional regulator SinR Regulator
  SR852_RS11715 (SR852_11715) sinI 2293441..2293617 (-) 177 WP_003183444.1 anti-repressor SinI Regulator
  SR852_RS11720 (SR852_11720) - 2293808..2294602 (-) 795 WP_003183441.1 YqhG family protein -
  SR852_RS11725 (SR852_11725) - 2294609..2296288 (-) 1680 WP_003183439.1 DEAD/DEAH box helicase -
  SR852_RS11730 (SR852_11730) gcvT 2296881..2297975 (+) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12963.59 Da        Isoelectric Point: 5.9495

>NTDB_id=913233 SR852_RS11710 WP_006637528.1 2293072..2293407(-) (sinR) [Bacillus licheniformis strain ATCC 14580]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=913233 SR852_RS11710 WP_006637528.1 2293072..2293407(-) (sinR) [Bacillus licheniformis strain ATCC 14580]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937