Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SR852_RS11315 Genome accession   NZ_CP140161
Coordinates   2227023..2227793 (+) Length   256 a.a.
NCBI ID   WP_003183624.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 14580     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2222023..2232793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS11285 (SR852_11285) - 2222367..2224421 (+) 2055 WP_223307119.1 HD family phosphohydrolase -
  SR852_RS11290 (SR852_11290) ybeY 2224418..2224894 (+) 477 WP_003183635.1 rRNA maturation RNase YbeY -
  SR852_RS11295 (SR852_11295) - 2224872..2225252 (+) 381 WP_003183633.1 diacylglycerol kinase family protein -
  SR852_RS11300 (SR852_11300) - 2225384..2225794 (+) 411 WP_003183631.1 cytidine deaminase -
  SR852_RS11305 (SR852_11305) era 2225775..2226680 (+) 906 WP_009327871.1 GTPase Era -
  SR852_RS11310 (SR852_11310) - 2226842..2226985 (+) 144 WP_003183626.1 YqzL family protein -
  SR852_RS11315 (SR852_11315) recO 2227023..2227793 (+) 771 WP_003183624.1 DNA repair protein RecO Machinery gene
  SR852_RS11320 (SR852_11320) glyQ 2228125..2229012 (+) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  SR852_RS11325 (SR852_11325) glyS 2229005..2231044 (+) 2040 WP_009327872.1 glycine--tRNA ligase subunit beta -
  SR852_RS11330 (SR852_11330) - 2231242..2231880 (+) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  SR852_RS11335 (SR852_11335) - 2231906..2232718 (+) 813 WP_003183615.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29473.12 Da        Isoelectric Point: 8.5644

>NTDB_id=913229 SR852_RS11315 WP_003183624.1 2227023..2227793(+) (recO) [Bacillus licheniformis strain ATCC 14580]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=913229 SR852_RS11315 WP_003183624.1 2227023..2227793(+) (recO) [Bacillus licheniformis strain ATCC 14580]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAGATCATTACGCTATTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCATCTTTTTTATTCCGCAAATCATCCGGCCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCTTACGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTGCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTTATTCAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

78.125

100

0.781