Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SR852_RS02850 Genome accession   NZ_CP140161
Coordinates   573186..573476 (+) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 14580     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 568186..578476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS02835 (SR852_02835) - 568396..569721 (-) 1326 WP_003178178.1 G5 and 3D domain-containing protein -
  SR852_RS02840 (SR852_02840) - 569838..570605 (-) 768 WP_003178177.1 TatD family hydrolase -
  SR852_RS02845 (SR852_02845) metG 570690..572678 (-) 1989 WP_003178175.1 methionine--tRNA ligase -
  SR852_RS02850 (SR852_02850) abrB 573186..573476 (+) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SR852_RS02855 (SR852_02855) rsmI 573525..574400 (-) 876 WP_025805862.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SR852_RS02860 (SR852_02860) - 574375..574668 (-) 294 WP_003178169.1 GIY-YIG nuclease family protein -
  SR852_RS02865 (SR852_02865) - 574655..575398 (-) 744 WP_003178166.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SR852_RS02870 (SR852_02870) yabA 575463..575825 (-) 363 WP_003178164.1 DNA replication initiation control protein YabA -
  SR852_RS02875 (SR852_02875) - 575840..576667 (-) 828 WP_003178162.1 PSP1 domain-containing protein -
  SR852_RS02880 (SR852_02880) holB 576670..577659 (-) 990 WP_003178160.1 DNA polymerase III subunit delta' -
  SR852_RS02885 (SR852_02885) - 577671..578111 (-) 441 WP_003178158.1 YaaR family protein -
  SR852_RS02890 (SR852_02890) - 578123..578452 (-) 330 WP_003178156.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=913199 SR852_RS02850 WP_085959887.1 573186..573476(+) (abrB) [Bacillus licheniformis strain ATCC 14580]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=913199 SR852_RS02850 WP_085959887.1 573186..573476(+) (abrB) [Bacillus licheniformis strain ATCC 14580]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938