Detailed information NTG0913145

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: SR914_RS12245
• Genome accession: NZ_CP140157
• Coordinates: 2658002..2659180 (-)
• Length: 392 a.a.
• NCBI ID: WP_003051858.1
• Uniprot ID: -
• Organism: Comamonas testosteroni strain DSMZ 14576
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2653002..2664180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SR914_RS12220 (SR914_12220)	-	2653448..2654377 (+)	930	WP_003051850.1	dihydrodipicolinate synthase family protein	-
SR914_RS12225 (SR914_12225)	-	2654492..2655940 (+)	1449	WP_003051851.1	aldehyde dehydrogenase family protein	-
SR914_RS12230 (SR914_12230)	-	2655925..2656233 (-)	309	WP_003051854.1	hypothetical protein	-
SR914_RS12235 (SR914_12235)	-	2656473..2657477 (+)	1005	WP_003051856.1	2-dehydropantoate 2-reductase	-
SR914_RS12240 (SR914_12240)	cutA	2657520..2657894 (+)	375	WP_003051857.1	divalent-cation tolerance protein CutA	-
SR914_RS12245 (SR914_12245)	pilA	2658002..2659180 (-)	1179	WP_003051858.1	signal recognition particle-docking protein FtsY	Machinery gene
SR914_RS12250 (SR914_12250)	-	2659245..2660678 (+)	1434	WP_003051860.1	M16 family metallopeptidase	-
SR914_RS12255 (SR914_12255)	-	2661012..2662364 (+)	1353	WP_003051861.1	M16 family metallopeptidase	-
SR914_RS12260 (SR914_12260)	rsmD	2662361..2663071 (+)	711	WP_003051863.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
SR914_RS12265 (SR914_12265)	coaD	2663232..2663726 (+)	495	WP_003051866.1	pantetheine-phosphate adenylyltransferase	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 41417.98 Da
• Isoelectric Point: 6.3734

>NTDB_id=913145 SR914_RS12245 WP_003051858.1 2658002..2659180(-) (pilA) [Comamonas testosteroni strain DSMZ 14576]
MFSFFKKKPNSPDVVNTTPAAETTAAPASASASAAPTRPASQDTPAAPAENGNSSWWRKPFGGGATAKAGEDQPATQDFV
AAPEPTAKPQAPNSRQSWMERLKAGLRKTGSSIATVFTGTQIDDRLYEELEDALLMADTGVKATQHLLEDLKRRVKETKT
TEPAAVKALLADALTDLLRPLEKPLTIGEHTPTVIMVAGVNGAGKTTSIGKLTKHLADGEQSVLLAAADTFRAAAREQLG
VWANRNTVEIISQDGGDPAAVSFDAVSAGKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGN
TGQNALTQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLETFSAREFAQALLS

Nucleotide

• Length: 1179 bp

>NTDB_id=913145 SR914_RS12245 WP_003051858.1 2658002..2659180(-) (pilA) [Comamonas testosteroni strain DSMZ 14576]
ATGTTCAGTTTTTTCAAGAAAAAGCCCAATTCACCCGATGTGGTGAACACCACGCCCGCTGCCGAGACAACCGCGGCGCC
TGCGTCTGCGTCTGCGTCTGCTGCGCCAACCAGGCCCGCTTCACAGGATACGCCTGCTGCGCCTGCCGAAAATGGCAACA
GCTCCTGGTGGCGCAAGCCCTTTGGCGGCGGCGCGACGGCCAAGGCCGGCGAAGATCAGCCTGCTACTCAGGATTTTGTA
GCAGCCCCCGAGCCTACCGCAAAGCCGCAAGCCCCAAATTCCCGTCAAAGCTGGATGGAACGCCTGAAAGCCGGTCTGCG
CAAGACCGGCTCCAGCATTGCCACCGTCTTTACCGGCACCCAGATCGACGACCGGCTCTATGAAGAGCTGGAGGACGCGC
TGCTGATGGCCGACACCGGCGTCAAGGCCACCCAGCATCTGCTGGAAGACCTGAAGCGCCGCGTCAAGGAAACCAAGACC
ACCGAGCCCGCCGCCGTCAAGGCACTGCTGGCCGATGCGCTGACCGATTTGCTCAGGCCGCTGGAAAAGCCGCTGACCAT
CGGCGAGCACACACCGACCGTCATCATGGTGGCCGGCGTCAACGGTGCGGGCAAGACCACTTCCATCGGCAAGCTGACCA
AGCATCTGGCCGACGGCGAGCAGTCCGTGCTGCTGGCCGCCGCCGACACCTTCCGCGCCGCCGCGCGTGAGCAGCTGGGC
GTCTGGGCCAATCGCAACACCGTGGAAATCATCAGCCAGGACGGTGGCGACCCCGCCGCCGTGAGCTTCGATGCCGTCTC
CGCCGGCAAGGCGCGCAAAAAGGATGTGGTGCTGGTCGATACGGCCGGACGCCTGCCCACGCAGCTGCATCTGATGGAAG
AGCTCAAGAAGATCAAGCGCGTGGTGAGCAAGGCCGACGGCACGGCGCCGCACGAGGTGCTGCTGGTGATTGACGGCAAC
ACCGGCCAGAACGCCCTGACCCAGGTGCGCGCCTTCGACGATGCACTGCAGCTCACGGGCCTGATCGTCACCAAACTCGA
CGGCACGGCCAAGGGCGGCGTGCTGGCCGCGATTGCGCAGGAGCGCCCCGTGCCCGTCTACTTCATCGGCGTGGGCGAGA
AGATCGAGGATCTGGAAACCTTCAGCGCACGCGAGTTCGCCCAGGCCCTGCTGTCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (192-391)

• SRP54-type protein, helical bundle domain (SRP54_N) (111-174)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.349	100	0.523