Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   L6432_RS06140 Genome accession   NZ_AP025339
Coordinates   1232481..1233077 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus paralicheniformis strain J25TS1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1227481..1238077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS06100 - 1228510..1229016 (-) 507 WP_020451914.1 PTS sugar transporter subunit IIA -
  L6432_RS06105 - 1229189..1229608 (+) 420 WP_020451915.1 hypothetical protein -
  L6432_RS06110 - 1229627..1230073 (-) 447 WP_020451916.1 YppG family protein -
  L6432_RS06115 - 1230252..1230452 (+) 201 WP_011198064.1 YppF family protein -
  L6432_RS06120 - 1230476..1230847 (-) 372 WP_039072802.1 YppE family protein -
  L6432_RS06125 - 1230905..1231132 (-) 228 WP_035338535.1 YppD family protein -
  L6432_RS06130 sspM 1231332..1231436 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  L6432_RS06135 - 1231468..1232427 (-) 960 WP_023857417.1 DUF2515 domain-containing protein -
  L6432_RS06140 recU 1232481..1233077 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  L6432_RS06145 - 1233135..1235804 (+) 2670 WP_023857418.1 PBP1A family penicillin-binding protein -
  L6432_RS06150 - 1235825..1236328 (-) 504 WP_023857419.1 YpoC family protein -
  L6432_RS06155 nth 1236325..1236987 (-) 663 WP_023857420.1 endonuclease III -
  L6432_RS06160 - 1237004..1237702 (-) 699 WP_023857421.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=91310 L6432_RS06140 WP_003182896.1 1232481..1233077(+) (recU) [Bacillus paralicheniformis strain J25TS1]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=91310 L6432_RS06140 WP_003182896.1 1232481..1233077(+) (recU) [Bacillus paralicheniformis strain J25TS1]
GTGATTCGTTACCCGAACGGCAAATCGTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACTCCTGTACAGATTGTTCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTGATCAAGGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACGAAGAGCCGGACCTC
TTTCCCGCTTCAAAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCTATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833

Multiple sequence alignment