Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SR858_RS22320 Genome accession   NZ_CP140152
Coordinates   5051870..5052253 (-) Length   127 a.a.
NCBI ID   WP_019921332.1    Uniprot ID   -
Organism   Duganella zoogloeoides strain ATCC 25935     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5046870..5057253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR858_RS22305 (SR858_22305) - 5048650..5050878 (-) 2229 WP_019921335.1 methyl-accepting chemotaxis protein -
  SR858_RS22310 (SR858_22310) - 5050894..5051481 (-) 588 WP_019921334.1 chemotaxis protein CheW -
  SR858_RS22315 (SR858_22315) - 5051485..5051850 (-) 366 WP_019921333.1 response regulator transcription factor -
  SR858_RS22320 (SR858_22320) pilG 5051870..5052253 (-) 384 WP_019921332.1 PleD family two-component system response regulator Regulator
  SR858_RS22325 (SR858_22325) - 5052300..5052452 (-) 153 WP_019921331.1 rubredoxin -
  SR858_RS22330 (SR858_22330) - 5052549..5053418 (+) 870 WP_026637198.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SR858_RS22335 (SR858_22335) hemL 5053457..5054758 (+) 1302 WP_019921329.1 glutamate-1-semialdehyde 2,1-aminomutase -
  SR858_RS22340 (SR858_22340) - 5054787..5056085 (-) 1299 WP_019921328.1 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13505.58 Da        Isoelectric Point: 7.2143

>NTDB_id=913085 SR858_RS22320 WP_019921332.1 5051870..5052253(-) (pilG) [Duganella zoogloeoides strain ATCC 25935]
MNNALTIMVIDDSSTIRRSAEIFLSGAGYRVVLADDGFDALAKLADHRPALVFCDIVMPRLDGYQTCTLIKNSAAFHATP
VLMLSSKDGLFDRARGAMAGSAACLAKPFTREGMLAAVRAHATSSPD

Nucleotide


Download         Length: 384 bp        

>NTDB_id=913085 SR858_RS22320 WP_019921332.1 5051870..5052253(-) (pilG) [Duganella zoogloeoides strain ATCC 25935]
ATGAATAACGCCCTGACGATCATGGTCATCGACGACAGCAGCACGATCCGCCGCTCGGCCGAGATTTTCCTGTCCGGCGC
CGGCTACCGCGTGGTGCTGGCCGACGACGGCTTCGACGCCCTGGCCAAGCTGGCCGACCATCGCCCGGCGCTGGTGTTCT
GCGACATCGTCATGCCGCGCCTCGACGGCTACCAGACCTGCACGCTGATCAAGAACAGCGCGGCATTCCACGCCACGCCG
GTGCTCATGCTGTCTTCGAAAGACGGCCTGTTCGACCGCGCGCGCGGCGCCATGGCCGGTTCCGCCGCGTGCCTGGCCAA
ACCATTCACCCGGGAAGGCATGCTTGCAGCGGTTCGCGCGCATGCCACCAGCTCACCAGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.5

94.488

0.543