Detailed information NTG0913084

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: SR858_RS21885
• Genome accession: NZ_CP140152
• Coordinates: 4964031..4965071 (+)
• Length: 346 a.a.
• NCBI ID: WP_019921418.1
• Uniprot ID: -
• Organism: Duganella zoogloeoides strain ATCC 25935
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4959031..4970071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SR858_RS21870 (SR858_21870)	-	4959751..4961463 (+)	1713	WP_019921421.1	thiamine pyrophosphate-binding protein	-
SR858_RS21875 (SR858_21875)	-	4961466..4961993 (-)	528	WP_019921420.1	hypothetical protein	-
SR858_RS21880 (SR858_21880)	-	4962068..4963165 (-)	1098	WP_019921419.1	porin	-
SR858_RS21885 (SR858_21885)	pilA	4964031..4965071 (+)	1041	WP_019921418.1	signal recognition particle-docking protein FtsY	Machinery gene
SR858_RS21890 (SR858_21890)	ftsE	4965095..4965751 (+)	657	WP_019921417.1	cell division ATP-binding protein FtsE	-
SR858_RS21895 (SR858_21895)	ftsX	4965748..4966665 (+)	918	WP_019921416.1	permease-like cell division protein FtsX	-
SR858_RS21900 (SR858_21900)	rpoH	4966956..4967855 (+)	900	WP_026637211.1	RNA polymerase sigma factor RpoH	-
SR858_RS21905 (SR858_21905)	-	4967946..4968209 (-)	264	WP_019921414.1	hypothetical protein	-
SR858_RS21910 (SR858_21910)	-	4968379..4968894 (+)	516	WP_019921413.1	hypothetical protein	-
SR858_RS21915 (SR858_21915)	-	4968903..4969226 (-)	324	WP_019921412.1	helix-turn-helix domain-containing protein	-
SR858_RS21920 (SR858_21920)	-	4969226..4969411 (-)	186	WP_019921411.1	hypothetical protein	-

Sequence

Protein

• Length: 346 a.a.
• Molecular weight: 36773.90 Da
• Isoelectric Point: 6.8921

>NTDB_id=913084 SR858_RS21885 WP_019921418.1 4964031..4965071(+) (pilA) [Duganella zoogloeoides strain ATCC 25935]
MFSFFKKKPVAPEVPQVSAPAPVPVPATPAAVVTSDLPDLLPIEEPAQKQSWMSRLKAGLSKTSSNLSLLFVGAKIDDDL
YDELEAALLMADAGVDATEYLLTALKRKVKEDKLLDAAAVKAALKQLLTELLLPLQKPFELGRHQPMVMMISGVNGAGKT
TTIGKLAKHMQSNGQSVLLAAGDTFRAAAREQLMVWGQRNNITVISQASGDPAAVSFDAVQSGKARGLDVVMIDTAGRLP
TQLHLMEELKKVQRVIGKGMDGAPHETLLVIDGNTGQNALAQVKAFDDALKLTGLVITKLDGTAKGGVLAAIARVRPVPV
YFIGIGEKIEDLQPFVAAEFVEALLG

Nucleotide

• Length: 1041 bp

>NTDB_id=913084 SR858_RS21885 WP_019921418.1 4964031..4965071(+) (pilA) [Duganella zoogloeoides strain ATCC 25935]
ATGTTTAGTTTCTTCAAGAAAAAACCTGTCGCCCCTGAAGTGCCGCAGGTGTCCGCTCCGGCGCCGGTTCCGGTTCCGGC
CACGCCGGCCGCTGTTGTCACGTCCGACCTGCCTGACCTGCTGCCGATCGAGGAGCCGGCACAAAAGCAATCATGGATGT
CGCGCCTGAAGGCGGGATTGTCCAAGACGTCGAGCAACCTGTCGCTGCTGTTCGTCGGCGCCAAGATCGACGACGACCTG
TACGACGAGCTCGAAGCAGCACTTTTAATGGCCGATGCCGGTGTCGATGCCACCGAGTACCTGCTGACTGCGCTCAAGCG
CAAGGTCAAGGAAGACAAGCTGCTCGATGCGGCCGCCGTCAAGGCCGCGCTCAAGCAATTGCTGACCGAACTGCTGCTGC
CGCTGCAAAAGCCGTTCGAACTGGGCCGCCACCAGCCGATGGTGATGATGATCTCGGGCGTCAATGGCGCCGGCAAGACC
ACCACCATCGGCAAGCTGGCCAAGCACATGCAGTCGAACGGCCAGTCGGTGCTGCTGGCCGCCGGCGACACATTCCGCGC
CGCCGCCCGCGAGCAACTGATGGTCTGGGGCCAGCGCAACAACATTACCGTGATCTCGCAGGCGTCCGGCGATCCGGCCG
CCGTGTCGTTTGATGCGGTGCAGTCGGGCAAGGCGCGCGGCCTCGACGTGGTGATGATCGACACCGCCGGCCGCCTGCCC
ACCCAGTTGCACCTGATGGAAGAATTGAAAAAGGTCCAGCGCGTGATCGGCAAGGGCATGGACGGCGCACCACACGAAAC
CTTGTTGGTCATCGACGGCAATACCGGGCAAAATGCGCTGGCGCAAGTGAAAGCGTTCGACGACGCCCTCAAGCTGACCG
GCCTGGTCATTACCAAGCTGGACGGCACTGCCAAGGGCGGCGTGCTCGCTGCCATCGCCCGCGTACGCCCGGTGCCCGTG
TACTTCATTGGCATCGGTGAAAAAATCGAAGACTTGCAGCCGTTTGTCGCGGCCGAGTTTGTTGAAGCGCTGCTCGGCTA
A

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (147-346)

• SRP54-type protein, helical bundle domain (SRP54_N) (72-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	60.066	87.572	0.526