Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SR921_RS21930 Genome accession   NZ_CP140150
Coordinates   4429872..4430354 (-) Length   160 a.a.
NCBI ID   WP_063608863.1    Uniprot ID   A0A268RW45
Organism   Shouchella clausii strain ATCC 700160     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4424872..4435354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR921_RS21910 (SR921_21910) rplI 4426066..4426509 (-) 444 WP_094424421.1 50S ribosomal protein L9 -
  SR921_RS21915 (SR921_21915) - 4426506..4428476 (-) 1971 WP_094424420.1 DHH family phosphoesterase -
  SR921_RS21920 (SR921_21920) - 4428506..4429429 (-) 924 WP_094424419.1 YybS family protein -
  SR921_RS21925 (SR921_21925) rpsR 4429613..4429846 (-) 234 WP_011248938.1 30S ribosomal protein S18 -
  SR921_RS21930 (SR921_21930) ssbA 4429872..4430354 (-) 483 WP_063608863.1 single-stranded DNA-binding protein Machinery gene
  SR921_RS21935 (SR921_21935) rpsF 4430425..4430712 (-) 288 WP_011248940.1 30S ribosomal protein S6 -
  SR921_RS21940 (SR921_21940) ychF 4431029..4432129 (-) 1101 WP_094424418.1 redox-regulated ATPase YchF -
  SR921_RS21945 (SR921_21945) - 4432198..4432392 (-) 195 WP_035205683.1 DUF951 domain-containing protein -
  SR921_RS21950 (SR921_21950) - 4432456..4433484 (-) 1029 WP_094424417.1 hypothetical protein -
  SR921_RS21955 (SR921_21955) yyaC 4433570..4434202 (+) 633 WP_094424416.1 spore protease YyaC -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17478.03 Da        Isoelectric Point: 4.6010

>NTDB_id=913046 SR921_RS21930 WP_063608863.1 4429872..4430354(-) (ssbA) [Shouchella clausii strain ATCC 700160]
MLNRVVLVGRLTRDPELRFTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
SYDNNEGRRVFVTEVVAESVQFLEPRNSQNQSSGNPGFDQYGAGSQGSGNQTGGSRSNGYDNDPFSNDGSIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=913046 SR921_RS21930 WP_063608863.1 4429872..4430354(-) (ssbA) [Shouchella clausii strain ATCC 700160]
TTGTTAAACCGTGTTGTTCTTGTCGGACGCTTAACGCGTGACCCTGAATTGCGATTCACGCCAAACGGTGTAGCTGTAGC
CAATTTTACGCTTGCAGTCAACCGTCCGTTTTCAAACCAGCAAGGAGAACGAGAAGCTGACTTCATTAACTGTGTTGTCT
GGCGCAAACCGGCTGAGAATGTCGCCAATTTCCTTAAAAAAGGGAGCCTTGCAGGAGTCGACGGCCGTGTGCAAACGCGA
AGCTATGACAATAATGAAGGCAGGCGCGTTTTTGTAACGGAAGTCGTTGCTGAAAGCGTCCAATTTCTCGAACCTCGCAA
TAGTCAAAACCAATCCTCTGGGAATCCTGGTTTTGATCAGTACGGCGCTGGCAGCCAAGGTTCTGGCAACCAAACTGGTG
GCAGCCGTTCTAATGGATATGATAACGACCCGTTCTCGAATGACGGTTCGATTGATATTTCCGATGATGATCTTCCATTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A268RW45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.023

100

0.731
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

66.25

0.406