Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   L6432_RS03275 Genome accession   NZ_AP025339
Coordinates   637029..637931 (+) Length   300 a.a.
NCBI ID   WP_020451380.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J25TS1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 632029..642931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS03255 - 632681..634378 (+) 1698 WP_033155131.1 hypothetical protein -
  L6432_RS03260 - 634375..634659 (+) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  L6432_RS03265 sucC 634835..635995 (+) 1161 WP_020451378.1 ADP-forming succinate--CoA ligase subunit beta -
  L6432_RS03270 sucD 636014..636916 (+) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  L6432_RS03275 dprA 637029..637931 (+) 903 WP_020451380.1 DNA-processing protein DprA Machinery gene
  L6432_RS03280 topA 638136..640211 (+) 2076 WP_020451381.1 type I DNA topoisomerase -
  L6432_RS03285 trmFO 640287..641591 (+) 1305 WP_025811382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  L6432_RS03290 xerC 641658..642572 (+) 915 WP_025811383.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33165.58 Da        Isoelectric Point: 10.0575

>NTDB_id=91304 L6432_RS03275 WP_020451380.1 637029..637931(+) (dprA) [Bacillus paralicheniformis strain J25TS1]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTDEKNHLLTKLSLKRSDLCSIRKLAKQELSNVKRLIRSYEAAGVRM
AAICSPDYPASLKTIHDPPPVLFLKGDVKLLNEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPHVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSCGPSRLIQEGAKLVLNIEDILSELPPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=91304 L6432_RS03275 WP_020451380.1 637029..637931(+) (dprA) [Bacillus paralicheniformis strain J25TS1]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGACGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGAAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGAGTCCGCATG
GCCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAGA
TGTTAAACTTCTCAATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCCCAT
CAGGAGAGCATCTGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCCACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCTGGTCCGATCTTTGACGCCAACTCTTGCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.191

99.667

0.57
  dprA Haemophilus influenzae Rd KW20

45.763

78.667

0.36

Multiple sequence alignment