Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SR921_RS15100 Genome accession   NZ_CP140150
Coordinates   3005954..3006907 (-) Length   317 a.a.
NCBI ID   WP_062749836.1    Uniprot ID   A0A268S1B2
Organism   Shouchella clausii strain ATCC 700160     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3000954..3011907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR921_RS15070 (SR921_15070) - 3001020..3001643 (+) 624 WP_094426453.1 deoxynucleoside kinase -
  SR921_RS15075 (SR921_15075) - 3001655..3002284 (+) 630 WP_011247732.1 deoxynucleoside kinase -
  SR921_RS15080 (SR921_15080) - 3002321..3002929 (-) 609 WP_157730443.1 restriction endonuclease -
  SR921_RS15085 (SR921_15085) - 3003105..3004076 (-) 972 WP_094426449.1 siderophore ABC transporter substrate-binding protein -
  SR921_RS15090 (SR921_15090) - 3004193..3005014 (-) 822 WP_216924644.1 ABC transporter ATP-binding protein -
  SR921_RS15095 (SR921_15095) - 3005011..3005964 (-) 954 WP_157730442.1 iron chelate uptake ABC transporter family permease subunit -
  SR921_RS15100 (SR921_15100) ceuB 3005954..3006907 (-) 954 WP_062749836.1 ABC transporter permease Machinery gene
  SR921_RS15105 (SR921_15105) - 3007057..3007683 (-) 627 WP_157730441.1 phosphatase PAP2 family protein -
  SR921_RS15110 (SR921_15110) - 3007925..3009322 (+) 1398 WP_094426445.1 L-cystine transporter -
  SR921_RS15115 (SR921_15115) - 3009493..3009966 (-) 474 WP_063609019.1 small multi-drug export protein -
  SR921_RS15120 (SR921_15120) - 3010055..3010513 (+) 459 WP_094426443.1 DinB family protein -
  SR921_RS15125 (SR921_15125) - 3010542..3010922 (-) 381 WP_063609017.1 YisL family protein -
  SR921_RS15130 (SR921_15130) - 3010997..3011494 (-) 498 WP_063609016.1 CcdC family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35017.21 Da        Isoelectric Point: 10.1418

>NTDB_id=913035 SR921_RS15100 WP_062749836.1 3005954..3006907(-) (ceuB) [Shouchella clausii strain ATCC 700160]
MKIRYLLPLLLILSFASLFIGVQDISPLDLFRLDDEDVQTLVISRIPRLLSVLIVGVSLSVCGLIMQQLTQNKFVSPTTA
GTMDWARLGILVAVVVFTQASTLQRMFIAFLFALFGTFLFMKILERIRFKNVVFVPLVGLMLGSVVNSITTFLAYRYDLV
QSLSSWMQGSFSLVLKGRYEILYIGIPLVVIAFLFANRFTVAGMGKDFSTNLGLNYNQIMNIGLFIVAMITATIVVTIGS
IPFLGLVIPNIVSIIRGDNLKNSLPHTALLGAIFLLACDILGRVLIYPYEIPIGLVVGVVGSAIFLYLLLRRRSHAA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=913035 SR921_RS15100 WP_062749836.1 3005954..3006907(-) (ceuB) [Shouchella clausii strain ATCC 700160]
ATGAAAATAAGATATTTACTCCCTTTGCTTTTGATTTTATCGTTTGCATCTTTATTTATTGGCGTACAGGATATATCGCC
ACTTGATTTGTTTCGTCTAGACGATGAAGACGTGCAAACACTCGTCATTAGCCGTATCCCTCGTCTATTAAGTGTGTTGA
TTGTCGGTGTTAGTTTAAGCGTTTGCGGTTTAATTATGCAGCAGCTTACACAAAACAAATTTGTTTCGCCGACAACAGCT
GGAACTATGGATTGGGCTCGGCTTGGCATTCTTGTCGCCGTGGTTGTCTTTACACAAGCAAGCACGCTGCAAAGGATGTT
TATTGCCTTTCTTTTTGCGTTGTTTGGAACGTTTCTTTTTATGAAAATACTGGAGCGCATCCGCTTTAAAAACGTTGTGT
TTGTCCCGCTTGTCGGGCTTATGTTAGGTAGTGTGGTCAACTCAATCACCACTTTTCTAGCTTACCGATATGATTTAGTG
CAAAGCTTGTCTTCTTGGATGCAAGGGAGCTTTTCACTCGTTCTTAAAGGGCGCTATGAAATTTTATACATAGGCATTCC
CCTTGTTGTCATTGCCTTTTTATTCGCAAATCGCTTTACGGTGGCAGGAATGGGGAAGGATTTTTCGACAAACTTGGGCT
TAAATTATAACCAAATTATGAATATCGGCCTTTTCATTGTCGCGATGATCACGGCTACGATTGTCGTCACAATTGGTTCG
ATTCCTTTTTTAGGGCTAGTCATTCCAAACATCGTTTCGATTATAAGAGGGGACAACTTAAAAAACAGTTTGCCTCATAC
AGCGCTATTAGGCGCCATTTTCTTGCTCGCTTGTGATATTTTAGGGCGTGTTCTCATTTATCCATATGAAATTCCGATTG
GACTGGTCGTTGGGGTTGTCGGGAGCGCGATCTTTTTGTACTTGCTCTTAAGGAGACGATCTCATGCAGCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A268S1B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.367

99.685

0.492