Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   SR921_RS13645 Genome accession   NZ_CP140150
Coordinates   2701025..2701207 (-) Length   60 a.a.
NCBI ID   WP_094426919.1    Uniprot ID   A0A268RX02
Organism   Shouchella clausii strain ATCC 700160     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 2696025..2706207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR921_RS13630 (SR921_13630) fabF 2698126..2699367 (-) 1242 WP_094426925.1 beta-ketoacyl-ACP synthase II -
  SR921_RS13635 (SR921_13635) - 2699416..2700351 (-) 936 WP_094426923.1 beta-ketoacyl-ACP synthase III -
  SR921_RS13640 (SR921_13640) - 2700546..2700821 (+) 276 WP_094426921.1 hypothetical protein -
  SR921_RS13645 (SR921_13645) comZ 2701025..2701207 (-) 183 WP_094426919.1 ComZ family protein Regulator
  SR921_RS13650 (SR921_13650) - 2701353..2702960 (+) 1608 WP_094426917.1 peptide chain release factor 3 -
  SR921_RS13655 (SR921_13655) - 2703018..2703854 (-) 837 WP_157730453.1 NAD(P)-dependent oxidoreductase -
  SR921_RS13660 (SR921_13660) - 2703910..2704602 (-) 693 WP_094426912.1 hypothetical protein -
  SR921_RS13665 (SR921_13665) argF 2704934..2705878 (-) 945 WP_094426910.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 7002.17 Da        Isoelectric Point: 4.5738

>NTDB_id=913029 SR921_RS13645 WP_094426919.1 2701025..2701207(-) (comZ) [Shouchella clausii strain ATCC 700160]
MEQHERNLKFMEIAMKHVPEARKLLEGKGIEVTMDELQPLLALLLHVMNEAYELGLNEQE

Nucleotide


Download         Length: 183 bp        

>NTDB_id=913029 SR921_RS13645 WP_094426919.1 2701025..2701207(-) (comZ) [Shouchella clausii strain ATCC 700160]
ATGGAACAGCACGAAAGAAATTTGAAGTTCATGGAAATCGCCATGAAGCATGTACCTGAAGCGCGGAAATTGCTAGAAGG
CAAAGGCATAGAAGTAACAATGGATGAACTGCAGCCGCTGCTAGCATTGTTGCTTCATGTGATGAACGAAGCGTATGAAC
TTGGGTTAAACGAGCAGGAATGA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A268RX02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

51.786

93.333

0.483