Detailed information NTG0912962

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: U1R71_RS19960
• Genome accession: NZ_CP140123
• Coordinates: 3716666..3717811 (+)
• Length: 381 a.a.
• NCBI ID: WP_014481226.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SJTU2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3711666..3722811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U1R71_RS19935 (U1R71_19935)	albF	3711682..3712962 (+)	1281	WP_014481221.1	M16 family metallopeptidase	-
U1R71_RS19940 (U1R71_19940)	albG	3712959..3713660 (+)	702	WP_014481222.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
U1R71_RS19945 (U1R71_19945)	ywhL	3713666..3715042 (-)	1377	WP_014481223.1	YncE family protein	-
U1R71_RS19950 (U1R71_19950)	ywhK	3715081..3716436 (-)	1356	WP_014481224.1	YncE family protein	-
U1R71_RS19955 (U1R71_19955)	-	3716433..3716663 (-)	231	Protein_3869	hypothetical protein	-
U1R71_RS19960 (U1R71_19960)	rapF	3716666..3717811 (+)	1146	WP_014481226.1	response regulator aspartate phosphatase RapF	Regulator
U1R71_RS19965 (U1R71_19965)	phrF	3717795..3717914 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
U1R71_RS19970 (U1R71_19970)	-	3718012..3718439 (+)	428	Protein_3872	YbaK/EbsC family protein	-
U1R71_RS19975 (U1R71_19975)	speB	3718504..3719376 (-)	873	WP_003227545.1	agmatinase	-
U1R71_RS19980 (U1R71_19980)	speE	3719437..3720267 (-)	831	WP_003227543.1	spermidine synthase	-
U1R71_RS19985 (U1R71_19985)	pbpG	3720469..3722544 (+)	2076	WP_014481227.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45627.12 Da
• Isoelectric Point: 5.1503

>NTDB_id=912962 U1R71_RS19960 WP_014481226.1 3716666..3717811(+) (rapF) [Bacillus subtilis strain SJTU2]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=912962 U1R71_RS19960 WP_014481226.1 3716666..3717811(+) (rapF) [Bacillus subtilis strain SJTU2]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	99.738	100	0.997
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572