Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   U1R71_RS16215 Genome accession   NZ_CP140123
Coordinates   3017670..3017810 (-) Length   46 a.a.
NCBI ID   WP_003220708.1    Uniprot ID   G4P060
Organism   Bacillus subtilis strain SJTU2     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3012670..3022810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS16195 (U1R71_16195) - 3014800..3015924 (+) 1125 WP_031601042.1 IS4-like element IS4Bsu1 family transposase -
  U1R71_RS16200 (U1R71_16200) - 3016054..3016383 (-) 330 WP_322808282.1 hypothetical protein -
  U1R71_RS16205 (U1R71_16205) comX 3016399..3016620 (-) 222 WP_014480704.1 competence pheromone ComX -
  U1R71_RS16210 (U1R71_16210) - 3016622..3017485 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  U1R71_RS16215 (U1R71_16215) degQ 3017670..3017810 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  U1R71_RS16220 (U1R71_16220) - 3018032..3018157 (+) 126 WP_003228793.1 hypothetical protein -
  U1R71_RS16225 (U1R71_16225) - 3018271..3018639 (+) 369 WP_014477834.1 hypothetical protein -
  U1R71_RS16230 (U1R71_16230) pdeH 3018615..3019844 (-) 1230 WP_014480707.1 cyclic di-GMP phosphodiesterase -
  U1R71_RS16235 (U1R71_16235) pncB 3019980..3021452 (-) 1473 WP_014480708.1 nicotinate phosphoribosyltransferase -
  U1R71_RS16240 (U1R71_16240) pncA 3021468..3022019 (-) 552 WP_014480709.1 cysteine hydrolase family protein -
  U1R71_RS16245 (U1R71_16245) yueI 3022116..3022514 (-) 399 WP_014480710.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5546.44 Da        Isoelectric Point: 6.2559

>NTDB_id=912951 U1R71_RS16215 WP_003220708.1 3017670..3017810(-) (degQ) [Bacillus subtilis strain SJTU2]
MEKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=912951 U1R71_RS16215 WP_003220708.1 3017670..3017810(-) (degQ) [Bacillus subtilis strain SJTU2]
ATGGAAAAGAAACTTGAAGAAGTAAAACAATTGTTATTCCGACTCGAACTTGATATTAAAGAAACGACAGATTCATTACG
AAACATTAACAAAAGCATTGATCAACTCGATAAATACAATTATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P060

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

100

100

1