Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   U1R71_RS12655 Genome accession   NZ_CP140123
Coordinates   2354066..2354401 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SJTU2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2349066..2359401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS12635 (U1R71_12635) gcvT 2349658..2350746 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  U1R71_RS12640 (U1R71_12640) hepAA 2351188..2352861 (+) 1674 WP_014480248.1 DEAD/DEAH box helicase -
  U1R71_RS12645 (U1R71_12645) yqhG 2352882..2353676 (+) 795 WP_014480249.1 YqhG family protein -
  U1R71_RS12650 (U1R71_12650) sinI 2353859..2354032 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  U1R71_RS12655 (U1R71_12655) sinR 2354066..2354401 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  U1R71_RS12660 (U1R71_12660) tasA 2354494..2355279 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  U1R71_RS12665 (U1R71_12665) sipW 2355343..2355915 (-) 573 WP_003230181.1 signal peptidase I SipW -
  U1R71_RS12670 (U1R71_12670) tapA 2355899..2356660 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  U1R71_RS12675 (U1R71_12675) yqzG 2356932..2357258 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  U1R71_RS12680 (U1R71_12680) spoIITA 2357300..2357479 (-) 180 WP_014480252.1 YqzE family protein -
  U1R71_RS12685 (U1R71_12685) comGG 2357550..2357924 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  U1R71_RS12690 (U1R71_12690) comGF 2357925..2358308 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  U1R71_RS12695 (U1R71_12695) comGE 2358334..2358681 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  U1R71_RS12700 (U1R71_12700) comGD 2358665..2359096 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  U1R71_RS12705 (U1R71_12705) comGC 2359086..2359382 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=912928 U1R71_RS12655 WP_003226345.1 2354066..2354401(+) (sinR) [Bacillus subtilis strain SJTU2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=912928 U1R71_RS12655 WP_003226345.1 2354066..2354401(+) (sinR) [Bacillus subtilis strain SJTU2]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1