Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   U1R71_RS06220 Genome accession   NZ_CP140123
Coordinates   1196534..1197487 (+) Length   317 a.a.
NCBI ID   WP_014479436.1    Uniprot ID   -
Organism   Bacillus subtilis strain SJTU2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1191534..1202487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS06190 (U1R71_06190) argF 1192076..1193035 (+) 960 WP_014479432.1 ornithine carbamoyltransferase -
  U1R71_RS06200 (U1R71_06200) yjzC 1194411..1194590 (+) 180 WP_003245356.1 YjzC family protein -
  U1R71_RS06205 (U1R71_06205) yjzD 1194636..1194821 (-) 186 WP_003245236.1 YjzD family protein -
  U1R71_RS06210 (U1R71_06210) - 1195070..1195804 (+) 735 WP_014479433.1 hypothetical protein -
  U1R71_RS06215 (U1R71_06215) - 1195886..1196443 (+) 558 WP_014479435.1 hypothetical protein -
  U1R71_RS06220 (U1R71_06220) med 1196534..1197487 (+) 954 WP_014479436.1 transcriptional regulator Med Regulator
  U1R71_RS06225 (U1R71_06225) comZ 1197502..1197693 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  U1R71_RS06230 (U1R71_06230) yjzB 1197723..1197950 (-) 228 WP_031600361.1 spore coat protein YjzB -
  U1R71_RS06235 (U1R71_06235) fabH 1198115..1199053 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  U1R71_RS06240 (U1R71_06240) fabF 1199076..1200317 (+) 1242 WP_014479438.1 beta-ketoacyl-ACP synthase II -
  U1R71_RS06245 (U1R71_06245) yjaZ 1200393..1201178 (+) 786 WP_014479439.1 DUF2268 domain-containing protein -
  U1R71_RS06250 (U1R71_06250) appD 1201370..1202356 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.88 Da        Isoelectric Point: 4.6652

>NTDB_id=912908 U1R71_RS06220 WP_014479436.1 1196534..1197487(+) (med) [Bacillus subtilis strain SJTU2]
MITRLVMIFSVLLLLSGCGKTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=912908 U1R71_RS06220 WP_014479436.1 1196534..1197487(+) (med) [Bacillus subtilis strain SJTU2]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGAAAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTCCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994