Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   U1R71_RS05820 Genome accession   NZ_CP140123
Coordinates   1116959..1117537 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SJTU2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111959..1122537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS22420 - 1112479..1112994 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  U1R71_RS22425 - 1113235..1113861 (-) 627 Protein_1077 protoglobin domain-containing protein -
  U1R71_RS05805 (U1R71_05805) comW 1113916..1115444 (-) 1529 Protein_1078 FAD-dependent oxidoreductase -
  U1R71_RS05810 (U1R71_05810) yhxC 1115548..1116405 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  U1R71_RS05815 (U1R71_05815) yhzC 1116433..1116666 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  U1R71_RS05820 (U1R71_05820) comK 1116959..1117537 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  U1R71_RS05825 (U1R71_05825) yhxD 1117582..1118481 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  U1R71_RS05830 (U1R71_05830) yhjA 1118698..1118967 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  U1R71_RS05835 (U1R71_05835) yhjB 1119011..1120480 (-) 1470 WP_014479374.1 sodium:solute symporter family protein -
  U1R71_RS05840 (U1R71_05840) yhjC 1120477..1120677 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  U1R71_RS05845 (U1R71_05845) - 1120876..1121247 (-) 372 WP_014476361.1 hypothetical protein -
  U1R71_RS05850 (U1R71_05850) yhjE 1121399..1122022 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  U1R71_RS05855 (U1R71_05855) lepB 1122024..1122530 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=912905 U1R71_RS05820 WP_003245329.1 1116959..1117537(+) (comK) [Bacillus subtilis strain SJTU2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=912905 U1R71_RS05820 WP_003245329.1 1116959..1117537(+) (comK) [Bacillus subtilis strain SJTU2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1