Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   L6432_RS00215 Genome accession   NZ_AP025339
Coordinates   42273..42851 (+) Length   192 a.a.
NCBI ID   WP_020450829.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J25TS1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 37273..47851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS22280 - 37771..38277 (-) 507 WP_370510583.1 methyl-accepting chemotaxis protein -
  L6432_RS22285 - 38578..38949 (-) 372 Protein_39 protoglobin family protein -
  L6432_RS00200 - 39170..40720 (-) 1551 WP_043054265.1 FAD-dependent oxidoreductase -
  L6432_RS00205 - 40841..41698 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  L6432_RS00210 - 41767..42000 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  L6432_RS00215 comK 42273..42851 (+) 579 WP_020450829.1 competence protein ComK Regulator
  L6432_RS00220 - 42845..43210 (-) 366 WP_020450830.1 hypothetical protein -
  L6432_RS00225 - 43418..44029 (+) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  L6432_RS00230 lepB 44042..44560 (+) 519 WP_020450832.1 signal peptidase I -
  L6432_RS00235 - 44689..46464 (-) 1776 WP_025811741.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22377.61 Da        Isoelectric Point: 8.2478

>NTDB_id=91289 L6432_RS00215 WP_020450829.1 42273..42851(+) (comK) [Bacillus paralicheniformis strain J25TS1]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFLVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=91289 L6432_RS00215 WP_020450829.1 42273..42851(+) (comK) [Bacillus paralicheniformis strain J25TS1]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGACCGACAGGACTTTCCTCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACAGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment