Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   U1R67_RS12695 Genome accession   NZ_CP140118
Coordinates   2722467..2723906 (+) Length   479 a.a.
NCBI ID   WP_139737885.1    Uniprot ID   -
Organism   Aeromonas caviae strain A20-9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2717467..2728906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R67_RS12665 (U1R67_12670) mlaF 2718045..2718845 (-) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -
  U1R67_RS12670 (U1R67_12675) - 2719052..2720047 (+) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  U1R67_RS12675 (U1R67_12680) kdsC 2720047..2720601 (+) 555 WP_042015859.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  U1R67_RS12680 (U1R67_12685) lptC 2720598..2721158 (+) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  U1R67_RS12685 (U1R67_12690) lptA 2721145..2721663 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  U1R67_RS12690 (U1R67_12695) lptB 2721676..2722401 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  U1R67_RS12695 (U1R67_12700) rpoN/rpoN1 2722467..2723906 (+) 1440 WP_139737885.1 RNA polymerase factor sigma-54 Machinery gene
  U1R67_RS12700 (U1R67_12705) hpf 2723927..2724214 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  U1R67_RS12705 (U1R67_12710) ptsN 2724217..2724663 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  U1R67_RS12710 (U1R67_12715) rapZ 2724704..2725570 (+) 867 WP_010675869.1 RNase adapter RapZ -
  U1R67_RS12715 (U1R67_12720) npr 2725591..2725863 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  U1R67_RS12720 (U1R67_12725) - 2725879..2727783 (-) 1905 WP_319921788.1 HTH domain-containing protein -
  U1R67_RS12725 (U1R67_12730) - 2727886..2728626 (-) 741 WP_201969900.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.61 Da        Isoelectric Point: 4.3728

>NTDB_id=912878 U1R67_RS12695 WP_139737885.1 2722467..2723906(+) (rpoN/rpoN1) [Aeromonas caviae strain A20-9]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGLIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=912878 U1R67_RS12695 WP_139737885.1 2722467..2723906(+) (rpoN/rpoN1) [Aeromonas caviae strain A20-9]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGACGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGCCTCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTTCGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486