Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   U2W42_RS01690 Genome accession   NZ_CP140116
Coordinates   314857..315543 (+) Length   228 a.a.
NCBI ID   WP_002991052.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NV27     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 309857..320543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2W42_RS01665 (U2W42_01665) ktrB 309999..311375 (-) 1377 WP_032459877.1 potassium uptake transporter channel subunit KtrB -
  U2W42_RS01670 (U2W42_01670) rsmG 311460..312173 (-) 714 WP_010921904.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  U2W42_RS01675 (U2W42_01675) - 312323..312880 (+) 558 WP_002985956.1 LemA family protein -
  U2W42_RS01680 (U2W42_01680) htpX 312927..313823 (+) 897 WP_002985953.1 zinc metalloprotease HtpX -
  U2W42_RS01685 (U2W42_01685) - 314057..314590 (+) 534 WP_011054200.1 DUF177 domain-containing protein -
  U2W42_RS01690 (U2W42_01690) covR 314857..315543 (+) 687 WP_002991052.1 two-component system response regulator CovR Regulator
  U2W42_RS01695 (U2W42_01695) aph(2'')-Ia 315707..317137 (+) 1431 WP_322475205.1 aminoglycoside O-phosphotransferase APH(2'')-Ia -
  U2W42_RS01700 (U2W42_01700) nrdR 317520..318014 (+) 495 WP_002985941.1 transcriptional regulator NrdR -
  U2W42_RS01705 (U2W42_01705) - 317998..319173 (+) 1176 WP_002991019.1 replication initiation and membrane attachment family protein -
  U2W42_RS01710 (U2W42_01710) dnaI 319174..320076 (+) 903 WP_002991016.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26618.70 Da        Isoelectric Point: 4.6586

>NTDB_id=912761 U2W42_RS01690 WP_002991052.1 314857..315543(+) (covR) [Streptococcus pyogenes strain NV27]
MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=912761 U2W42_RS01690 WP_002991052.1 314857..315543(+) (covR) [Streptococcus pyogenes strain NV27]
ATGACAAAGAAAATTTTAATTATTGAAGATGAAAAGAATCTGGCTAGATTCGTTTCTCTTGAGCTGCAACATGAGGGTTA
TGAAGTCATTGTTGAGGTCAATGGTCGTGAAGGGTTAGAAACTGCTTTGGAAAAAGAGTTTGATTTAATCCTGCTTGACT
TAATGTTACCAGAGATGGATGGTTTTGAAGTGACCCGTCGTTTGCAAACCGAAAAAACAACGTATATCATGATGATGACT
GCGCGTGATTCTATTATGGATGTGGTTGCAGGTTTAGACCGCGGTGCAGACGACTATATTGTTAAACCGTTTGCCATTGA
AGAACTACTTGCCCGTATTCGTGCTATTTTCCGCCGTCAAGATATTGAATCTGAGAAGAAAGTGCCTAGTCAAGGCATTT
ATCGAGATCTAGTTTTAAATCCACAAAACCGTTCAGTTAATCGTGGCGACGATGAGATTTCTCTCACTAAACGTGAATAT
GATTTGCTTAATATTTTGATGACTAATATGAATCGTGTCATGACACGTGAAGAATTATTGTCAAATGTTTGGAAATATGA
TGAAGCCGTTGAGACTAATGTTGTAGATGTCTATATTCGTTATCTCCGCGGCAAAATTGACATTCCAGGCAAGGAATCTT
ATATCCAAACAGTGCGTGGCATGGGATACGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.966

100

0.447
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425