Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   URF95_RS26020 Genome accession   NZ_CP140111
Coordinates   5588482..5589039 (+) Length   185 a.a.
NCBI ID   WP_023119823.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 19-3158     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5583482..5594039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URF95_RS26000 (URF95_26000) pilR 5584758..5586095 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  URF95_RS26005 (URF95_26005) thiO 5586141..5587235 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  URF95_RS26010 (URF95_26010) - 5587370..5587879 (+) 510 WP_003161431.1 GspH/FimT family pseudopilin -
  URF95_RS26015 (URF95_26015) - 5587985..5588491 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  URF95_RS26020 (URF95_26020) pilV 5588482..5589039 (+) 558 WP_023119823.1 type 4a pilus minor pilin PilV Machinery gene
  URF95_RS26025 (URF95_26025) pilW 5589036..5589860 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  URF95_RS26030 (URF95_26030) pilX 5589857..5590444 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  URF95_RS26035 (URF95_26035) pilY1 5590456..5593947 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20088.18 Da        Isoelectric Point: 8.2255

>NTDB_id=912629 URF95_RS26020 WP_023119823.1 5588482..5589039(+) (pilV) [Pseudomonas aeruginosa strain 19-3158]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGNNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=912629 URF95_RS26020 WP_023119823.1 5588482..5589039(+) (pilV) [Pseudomonas aeruginosa strain 19-3158]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAACAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989