Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   L6411_RS09915 Genome accession   NZ_AP025333
Coordinates   2080330..2081088 (+) Length   252 a.a.
NCBI ID   WP_155963393.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-189     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2075330..2086088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6411_RS09900 (GUT189_19190) - 2077714..2078398 (-) 685 Protein_1915 YoaK family protein -
  L6411_RS09905 (GUT189_19200) rlmH 2078423..2078902 (-) 480 WP_024531474.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  L6411_RS09910 (GUT189_19210) htrA 2079094..2080269 (+) 1176 WP_155963394.1 S1C family serine protease Regulator
  L6411_RS09915 (GUT189_19220) spo0J 2080330..2081088 (+) 759 WP_155963393.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 252 a.a.        Molecular weight: 28827.15 Da        Isoelectric Point: 9.5374

>NTDB_id=91262 L6411_RS09915 WP_155963393.1 2080330..2081088(+) (spo0J) [Streptococcus ruminantium strain GUT-189]
MEELRTLNISEIHPNPYQPRVHFDETKLAELAQSIRENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTEIPAVVKD
LTDDDLLRQAIIENLQRSDLNPIEEAQSYNNLINKGLTHDKIAQIMGKSRPYISNILRLLNLSTQTKKAVEEGKISQGHA
RQLLSLSEEKQAEWIQIILEKDLSVHALEKVLSNKKKKQVRQNNPFLKEQEVIISQHLGTTTKILQKKNGKGEIRIHFDN
LDEFERIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=91262 L6411_RS09915 WP_155963393.1 2080330..2081088(+) (spo0J) [Streptococcus ruminantium strain GUT-189]
ATGGAAGAATTACGTACCCTAAATATTTCAGAGATACATCCAAATCCCTATCAACCAAGAGTTCATTTTGATGAAACCAA
ACTGGCTGAATTAGCGCAATCTATCAGAGAAAATGGATTGATTCAACCGATTATTGTAAGAAAATCGTCCATTATTGGAT
ACGAATTATTGGCTGGAGAAAGAAGATTACGCGCCAGTCAATTAGCTGGTCTAACTGAAATACCGGCCGTTGTAAAAGAT
TTAACTGATGATGATTTACTCCGTCAGGCAATTATAGAAAACCTACAACGCTCAGATTTAAATCCTATTGAAGAGGCGCA
ATCTTATAATAATTTGATAAATAAAGGATTGACACATGATAAAATTGCCCAAATTATGGGAAAATCAAGACCTTATATCA
GTAATATATTGCGACTCTTAAACTTATCCACTCAAACAAAAAAAGCTGTAGAAGAAGGAAAAATTTCACAGGGGCACGCG
CGACAATTGCTCTCACTTTCCGAGGAAAAACAAGCTGAATGGATTCAAATCATTTTAGAAAAAGATTTAAGTGTGCACGC
GCTTGAAAAAGTATTGTCCAATAAAAAGAAGAAACAAGTTAGACAGAACAATCCATTTTTAAAAGAACAAGAGGTCATTA
TTAGCCAGCATCTTGGAACAACTACAAAAATTCTCCAGAAAAAAAATGGGAAAGGGGAGATTCGGATTCATTTTGATAAT
CTAGATGAATTTGAAAGAATTATCAACAGCTTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.545

100

0.548


Multiple sequence alignment