Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   U0N78_RS10975 Genome accession   NZ_CP140109
Coordinates   2288138..2288851 (-) Length   237 a.a.
NCBI ID   WP_024380213.1    Uniprot ID   A0A0Z8IMN0
Organism   Streptococcus suis strain 2022WUSS148     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2283138..2293851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0N78_RS10950 (U0N78_10950) trxA 2283220..2283534 (-) 315 WP_043027044.1 thioredoxin -
  U0N78_RS10955 (U0N78_10955) - 2284058..2284711 (-) 654 WP_043027045.1 GNAT family N-acetyltransferase -
  U0N78_RS10960 (U0N78_10960) - 2284735..2287068 (-) 2334 WP_043027046.1 endonuclease MutS2 -
  U0N78_RS10965 (U0N78_10965) - 2287224..2287772 (-) 549 WP_029175774.1 CvpA family protein -
  U0N78_RS10970 (U0N78_10970) - 2287769..2288080 (-) 312 WP_024406827.1 hypothetical protein -
  U0N78_RS10975 (U0N78_10975) treR 2288138..2288851 (-) 714 WP_024380213.1 trehalose operon repressor Regulator
  U0N78_RS10980 (U0N78_10980) treP 2289087..2291081 (+) 1995 WP_105130416.1 PTS system trehalose-specific EIIBC component -
  U0N78_RS10985 (U0N78_10985) treC 2291432..2293057 (+) 1626 WP_043025942.1 alpha,alpha-phosphotrehalase -
  U0N78_RS10990 (U0N78_10990) - 2293126..2293488 (+) 363 WP_043027001.1 iron chaperone -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27213.11 Da        Isoelectric Point: 6.7419

>NTDB_id=912598 U0N78_RS10975 WP_024380213.1 2288138..2288851(-) (treR) [Streptococcus suis strain 2022WUSS148]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQELYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQIQDDYLVLIKSRVYLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=912598 U0N78_RS10975 WP_024380213.1 2288138..2288851(-) (treR) [Streptococcus suis strain 2022WUSS148]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTCCAGGAACTCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGCCGAGAAGA
ACGAGATTTGATGCAGATTCAGGATGATTATCTGGTGTTGATAAAATCCAGGGTCTACTTAGGAGATACGCGACAATTTC
AATACACTGAAAGTAAGCACAAGATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8IMN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515