Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   SO574_RS20520 Genome accession   NZ_CP140103
Coordinates   1467545..1468726 (-) Length   393 a.a.
NCBI ID   WP_322804575.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462545..1473726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS20505 (SO574_20505) - 1462963..1464087 (-) 1125 WP_322804573.1 fatty acid desaturase -
  SO574_RS20510 (SO574_20510) - 1464358..1464906 (+) 549 WP_128812810.1 GNAT family N-acetyltransferase -
  SO574_RS20515 (SO574_20515) - 1465402..1467447 (+) 2046 WP_322804574.1 response regulator -
  SO574_RS20520 (SO574_20520) cqsA 1467545..1468726 (-) 1182 WP_322804575.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  SO574_RS20525 (SO574_20525) ylqF 1469034..1469978 (-) 945 WP_211917468.1 ribosome biogenesis GTPase YlqF -
  SO574_RS20530 (SO574_20530) - 1470267..1470986 (+) 720 WP_322804576.1 nitroreductase family protein -
  SO574_RS20535 (SO574_20535) - 1471242..1472222 (+) 981 WP_322804577.1 chemotaxis protein -
  SO574_RS20540 (SO574_20540) - 1472290..1472847 (-) 558 WP_322804578.1 type II secretion system protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44018.15 Da        Isoelectric Point: 6.3983

>NTDB_id=912544 SO574_RS20520 WP_322804575.1 1467545..1468726(-) (cqsA) [Vibrio alfacsensis strain VA-1]
MSQQLKSKPLPSFIEERLEFYFQDLIEPNTNQKHLVLGQRPQADAIVMQSNDYLSLSHNQDIQRAHRDAISSHDDNVVMS
AIFLQDETTKPAFEHQLAEYVGMESCLLSQSGWAANIGLLQTICAPNSPVYIDFFAHMSLWEGIRAAGAQAFPFMHNNMN
HLRKQVERHGPGVIVVDSIYSTIGTIAPLRDIYEMAKAYDCAVVVDESHSLGTHGPNGKGLVKALELTEHVDFITVSLAK
TFAYRAGAILGPKKLAQTLPFVAYPAIFSSTVLPQEIVRLEKTLEVIKKSDDKRNQLFNHAKALTTGLKQIGFHIRSESQ
IVALECGNERNTERVRDFLEDNNVFGAVFCRPATGRNKNIIRFSLNADMTPQDIDHVLTVCQKAFDHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=912544 SO574_RS20520 WP_322804575.1 1467545..1468726(-) (cqsA) [Vibrio alfacsensis strain VA-1]
ATGAGTCAACAATTGAAATCGAAACCCCTTCCTTCCTTTATCGAGGAACGCCTAGAATTTTACTTTCAAGATTTAATCGA
ACCAAATACAAACCAGAAGCACTTGGTTTTAGGACAGCGACCTCAGGCTGACGCAATAGTCATGCAGAGTAATGACTACC
TGTCTCTATCTCATAACCAAGATATTCAGCGAGCGCATCGTGATGCCATTTCAAGCCATGATGACAATGTTGTTATGTCC
GCAATTTTCCTTCAAGACGAAACCACTAAACCCGCATTTGAACATCAACTTGCCGAGTATGTTGGTATGGAAAGTTGCCT
ACTTTCTCAATCAGGTTGGGCCGCAAATATTGGTTTGCTACAGACTATCTGCGCTCCTAACAGCCCAGTCTATATTGATT
TTTTTGCTCATATGTCTTTATGGGAAGGTATCCGAGCTGCAGGCGCACAAGCCTTTCCTTTCATGCACAACAATATGAAC
CACTTACGCAAGCAAGTTGAGCGCCATGGACCTGGCGTCATTGTTGTCGACTCGATATACAGCACAATAGGCACCATCGC
CCCTCTTCGCGACATCTACGAAATGGCGAAAGCGTACGATTGTGCAGTCGTTGTTGATGAATCGCATTCTTTAGGGACTC
ACGGGCCGAATGGGAAGGGATTAGTAAAAGCATTAGAGCTGACAGAGCACGTGGATTTTATTACTGTCAGTTTAGCGAAG
ACATTTGCTTATCGTGCCGGAGCGATCCTTGGGCCAAAAAAGTTGGCACAAACACTCCCTTTTGTCGCATACCCAGCAAT
ATTCAGTTCAACTGTACTTCCTCAAGAAATCGTACGCCTTGAGAAGACACTCGAAGTTATTAAAAAGTCTGACGATAAAC
GAAATCAATTGTTTAACCATGCTAAAGCACTTACGACAGGCTTAAAGCAGATAGGTTTTCATATTCGTAGTGAATCCCAG
ATAGTTGCGTTGGAATGTGGTAATGAACGAAATACAGAGCGTGTTCGAGATTTTCTTGAAGATAATAACGTATTTGGAGC
AGTATTCTGCAGACCAGCCACGGGGCGTAATAAAAATATTATCCGTTTTTCACTGAATGCAGACATGACTCCACAAGATA
TTGATCATGTTCTAACGGTGTGTCAAAAAGCATTTGATCATCCAGAACTCGAATTCGTTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55