Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   SO574_RS15435 Genome accession   NZ_CP140103
Coordinates   307203..308300 (-) Length   365 a.a.
NCBI ID   WP_322804827.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 302203..313300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS15415 (SO574_15415) - 302519..302749 (+) 231 WP_322805179.1 hypothetical protein -
  SO574_RS15420 (SO574_15420) - 302945..303397 (-) 453 WP_322804824.1 Lrp/AsnC family transcriptional regulator -
  SO574_RS15425 (SO574_15425) - 303548..304474 (+) 927 WP_322804825.1 DMT family transporter -
  SO574_RS15430 (SO574_15430) luxQ 304627..307203 (-) 2577 WP_322804826.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  SO574_RS15435 (SO574_15435) luxP 307203..308300 (-) 1098 WP_322804827.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  SO574_RS15440 (SO574_15440) - 308577..308888 (-) 312 WP_221070308.1 GIY-YIG nuclease family protein -
  SO574_RS15445 (SO574_15445) - 308885..309538 (-) 654 WP_128813131.1 YceH family protein -
  SO574_RS15450 (SO574_15450) - 309632..309835 (-) 204 WP_223917805.1 hypothetical protein -
  SO574_RS15455 (SO574_15455) - 310076..310390 (+) 315 WP_005442423.1 DUF496 family protein -
  SO574_RS15460 (SO574_15460) - 310514..311848 (+) 1335 WP_221070310.1 MATE family efflux transporter -
  SO574_RS15465 (SO574_15465) - 312014..313006 (-) 993 WP_322804828.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41507.68 Da        Isoelectric Point: 5.5084

>NTDB_id=912543 SO574_RS15435 WP_322804827.1 307203..308300(-) (luxP) [Vibrio alfacsensis strain VA-1]
MRKSLLLSLMSIAGFSPVAQATQVLNGYWAYQDFLEQFPEQKQLTEQLSEAVRERPAPLSVSQNRPLRISVVYPGQQVSD
YWVRNIDAFEQRLDKLNINYQINQVFTRPNSDVKQQSLSLMEALKNKTDYLVFTLDTTRHRKFIEHVLDSSKTKLILQNI
TTPVRDWDEHQPFLYVGFDHAEGSRKLAKEFGKRFPKHSNYSVLYFSEGYISDIRGDTFIEQVTRNNQFELQSAYYTKAT
KASGYDATKASLSKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELKAIENGDLDITVMRMNDDTGIAMA
EAIKWDLEGKSVPTVYSGDFEVVTQSDSAERINALKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=912543 SO574_RS15435 WP_322804827.1 307203..308300(-) (luxP) [Vibrio alfacsensis strain VA-1]
ATGAGAAAATCGTTACTACTTTCCCTGATGTCGATAGCAGGCTTTTCGCCAGTTGCACAAGCCACTCAAGTATTGAATGG
TTACTGGGCCTATCAAGATTTTTTAGAACAATTTCCGGAACAAAAGCAGTTAACTGAACAGTTATCTGAAGCCGTTCGGG
AACGCCCCGCTCCTTTATCGGTCTCTCAAAATCGTCCTCTTCGAATTTCAGTGGTTTATCCCGGCCAGCAGGTATCGGAC
TATTGGGTAAGAAATATTGATGCTTTTGAGCAGCGCCTCGACAAGCTTAATATTAACTATCAAATTAATCAGGTATTTAC
GCGTCCAAATTCAGATGTTAAGCAACAAAGCTTATCACTAATGGAAGCGCTTAAGAATAAAACGGATTATTTGGTTTTTA
CACTCGATACAACAAGGCATCGCAAATTCATTGAGCACGTCCTTGATTCATCAAAAACAAAACTCATTTTGCAAAATATC
ACCACGCCAGTAAGAGACTGGGATGAACATCAACCTTTTTTGTATGTAGGTTTTGACCATGCAGAGGGAAGCCGAAAACT
TGCGAAGGAGTTTGGTAAGCGTTTTCCGAAACACAGTAATTACAGTGTGCTCTATTTTTCTGAGGGATACATCAGTGATA
TTCGTGGTGACACATTCATAGAGCAAGTCACTCGCAACAATCAGTTTGAGTTACAGTCGGCGTACTATACCAAAGCGACG
AAAGCTTCGGGATATGATGCCACAAAAGCGAGTTTATCTAAGTATCCAGATGTGGACTTCATCTACGCTTGTTCAACCGA
TGTGGCTTTGGGGGCTGTGGATGCATTGAAAGAGCTTGGTCGTGATGATGTGATGATTAATGGCTGGGGAGGCGGTTCTG
CTGAGCTAAAAGCGATTGAAAACGGTGACTTGGATATTACTGTAATGCGAATGAATGACGACACAGGTATCGCAATGGCA
GAAGCAATAAAGTGGGACCTAGAGGGCAAGTCGGTTCCGACCGTCTACTCTGGGGACTTTGAAGTTGTGACTCAATCAGA
CTCGGCAGAGCGAATCAATGCTTTGAAAAAACGAGCATTTCGATACTCAGATAACTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

65.479

100

0.655