Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   L6411_RS08365 Genome accession   NZ_AP025333
Coordinates   1740339..1742126 (-) Length   595 a.a.
NCBI ID   WP_237374064.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-189     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1735339..1747126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6411_RS08345 (GUT189_16120) - 1736139..1737041 (-) 903 WP_024531884.1 ABC transporter permease -
  L6411_RS08350 (GUT189_16130) opp4B 1737052..1738008 (-) 957 WP_024531883.1 oligopeptide ABC transporter permease -
  L6411_RS08355 (GUT189_16140) - 1738010..1738987 (-) 978 WP_050579600.1 ATP-binding cassette domain-containing protein -
  L6411_RS08360 (GUT189_16150) - 1738956..1739954 (-) 999 WP_024531881.1 ABC transporter ATP-binding protein -
  L6411_RS08365 (GUT189_16160) oppA 1740339..1742126 (-) 1788 WP_237374064.1 oligopeptide ABC transporter substrate-binding protein Regulator
  L6411_RS08370 (GUT189_16170) pbp3 1742337..1743578 (+) 1242 WP_237374065.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  L6411_RS08375 (GUT189_16180) sufB 1743812..1745227 (-) 1416 WP_120172170.1 Fe-S cluster assembly protein SufB -
  L6411_RS08380 (GUT189_16190) sufU 1745401..1745841 (-) 441 WP_120172171.1 Fe-S cluster assembly sulfur transfer protein SufU -
  L6411_RS08385 (GUT189_16200) - 1745828..1747054 (-) 1227 WP_237374066.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65625.04 Da        Isoelectric Point: 5.0392

>NTDB_id=91254 L6411_RS08365 WP_237374064.1 1740339..1742126(-) (oppA) [Streptococcus ruminantium strain GUT-189]
MKKTTKLFALAGVTLLSVAALSACGSKKSNTAKQDLSFPSEVKQEGTAVADAQLKVAVVSATTSTGLLIDELTSNTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKVKISLTGKDYKWSDGQPFTINDYIFTIKAMASKDYTGVRFDDRFLN
IVGMEEFVAGKASDISGIKKIDDHTVELSVKEVFPSMMHAGGKLPALVQPEHIYKNIPVKDWESSEYSRTAKIVGMGPWK
IKEIVNGESITYVPNEHYFKGAPKTSSMKVDIVSPDTIVAEMKAGNYDIADMPSDQVDSYKGLSNLNIVGSLDSSYEYIS
FNLGKYDNDQSKNVMDENAKMNDVKLRQAIAYAIDTKTAGEKLYHGLYHPAKSLIISFFGDLHDSELEGYTYNPEKAKKL
LDEAGYKDVDGDGIREGKDGKPFKISFAARKRTEANEALMQQYLAWWKEVGLNVELYTGRTIEGNTFYEMIKANDANIDM
YAAGWSTGYDPNPTGLWGPIAKFNMSRFVSDENTKLLEAFSSADSFDEKKNLENYKAWQKYAAEQAFAIPTFESEVLVAL
NKRVKNYDTKLGSASGNGIAYENIELLADKGEAAK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=91254 L6411_RS08365 WP_237374064.1 1740339..1742126(-) (oppA) [Streptococcus ruminantium strain GUT-189]
ATGAAGAAGACAACGAAACTTTTTGCACTTGCTGGTGTGACTCTCCTCTCAGTAGCGGCTCTTTCAGCATGTGGTTCTAA
GAAATCGAATACTGCAAAGCAAGATTTGTCATTCCCATCTGAAGTAAAACAAGAGGGAACTGCTGTAGCTGATGCGCAAC
TGAAAGTGGCTGTGGTCTCAGCTACAACTTCAACAGGTCTTTTGATTGACGAATTGACTTCAAATACCACTGACTCAACA
TTCGGTGGCATGGTTGATATTTCAATGTTTGGCTATGATGGTGACCGCAAGTTAGACGATTCAGGTCTTGCTAAGGCTGA
GTTTGATGTAAAAGGGAAAAAAGTAAAGATTAGCTTGACAGGTAAAGACTACAAGTGGTCTGATGGTCAACCGTTTACTA
TCAATGACTATATCTTCACCATCAAGGCAATGGCAAGCAAAGACTATACCGGTGTTCGTTTTGACGATAGATTTTTGAAT
ATTGTTGGTATGGAAGAGTTTGTTGCTGGAAAAGCTTCTGACATCTCTGGTATTAAGAAAATTGACGACCATACAGTGGA
ACTATCCGTAAAAGAAGTATTCCCGTCAATGATGCATGCTGGTGGTAAATTGCCTGCCCTCGTACAACCTGAACACATCT
ACAAAAACATTCCGGTCAAAGACTGGGAGAGCAGCGAGTACTCACGTACAGCTAAGATTGTAGGTATGGGACCTTGGAAG
ATCAAGGAAATCGTTAACGGTGAGTCTATCACATACGTTCCAAATGAGCATTACTTCAAGGGTGCGCCGAAAACAAGCTC
GATGAAGGTGGATATTGTGTCACCTGATACAATTGTTGCTGAGATGAAGGCTGGTAACTACGACATTGCGGATATGCCAT
CAGATCAGGTGGATTCGTATAAAGGCTTATCTAACCTTAATATTGTCGGTAGTCTTGACTCAAGTTATGAATATATCTCC
TTTAATCTTGGTAAATATGATAACGATCAGTCCAAAAATGTGATGGACGAAAATGCTAAGATGAATGATGTGAAGCTTCG
CCAAGCGATTGCTTATGCAATTGATACGAAGACAGCGGGTGAAAAATTGTACCACGGTCTATACCATCCAGCTAAGTCAT
TGATTATCTCCTTCTTCGGTGATCTTCATGATTCAGAATTGGAAGGCTACACTTACAATCCAGAAAAAGCGAAGAAACTC
TTGGATGAAGCTGGTTATAAGGATGTAGACGGAGATGGTATCCGCGAAGGTAAAGATGGTAAACCATTCAAGATTTCGTT
CGCAGCTCGTAAGCGTACAGAAGCTAACGAAGCACTTATGCAGCAGTACCTTGCTTGGTGGAAAGAAGTTGGCTTGAATG
TTGAGCTGTACACAGGGCGTACAATTGAAGGTAATACATTCTATGAAATGATTAAGGCGAATGATGCAAACATTGATATG
TATGCTGCCGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTCTTTGGGGACCAATTGCGAAGTTCAACATGTCACG
CTTTGTTTCTGATGAAAATACTAAGTTATTAGAAGCGTTTAGCTCGGCAGACTCATTTGATGAGAAGAAAAACCTTGAAA
ACTACAAGGCATGGCAAAAATATGCTGCTGAGCAAGCATTTGCTATTCCAACATTCGAGTCGGAAGTCTTGGTTGCTCTC
AACAAGCGTGTGAAGAACTATGATACTAAACTTGGATCAGCATCAGGAAATGGTATTGCTTATGAAAATATCGAACTGCT
TGCGGACAAGGGTGAAGCTGCGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(122-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

83.557

100

0.837

Multiple sequence alignment