Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   SO574_RS10995 Genome accession   NZ_CP140102
Coordinates   2449749..2450267 (-) Length   172 a.a.
NCBI ID   WP_128810206.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2444749..2455267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS10975 (SO574_10975) rpsP 2445249..2445497 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  SO574_RS10980 (SO574_10980) ffh 2445707..2447086 (-) 1380 WP_322803098.1 signal recognition particle protein -
  SO574_RS10985 (SO574_10985) - 2447300..2448094 (+) 795 WP_128810208.1 inner membrane protein YpjD -
  SO574_RS10990 (SO574_10990) - 2448339..2449613 (+) 1275 WP_322803099.1 CNNM domain-containing protein -
  SO574_RS10995 (SO574_10995) luxS 2449749..2450267 (-) 519 WP_128810206.1 S-ribosylhomocysteine lyase Regulator
  SO574_RS11000 (SO574_11000) - 2450357..2450962 (-) 606 WP_128810205.1 hypothetical protein -
  SO574_RS11005 (SO574_11005) gshA 2451008..2452576 (-) 1569 WP_322803100.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19167.92 Da        Isoelectric Point: 4.8637

>NTDB_id=912523 SO574_RS10995 WP_128810206.1 2449749..2450267(-) (luxS) [Vibrio alfacsensis strain VA-1]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGERVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILDSGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=912523 SO574_RS10995 WP_128810206.1 2449749..2450267(-) (luxS) [Vibrio alfacsensis strain VA-1]
ATGCCTTTATTAGACAGTTTTACCGTAGATCACACTCGTATGCATGCCCCAGCGGTTCGCGTGGCAAAAACAATGCAAAC
TCCAAAAGGGGATACGATCACAGTCTTTGATTTACGTTTTACCGCCCCAAACAAAGACATTCTTTCTGAGAAAGGGATTC
ATACGTTAGAGCACTTGTATGCTGGCTTTATGCGCAATCACCTAAATGGTGAGCGCGTTGAAATCATCGATATTTCGCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTAATTGGTACGCCTTCAGAGCAACAAGTGGCTGACGCCTGGATTGCTGC
AATGGAGGATGTGCTAAAGGTTGAGAGTCAAAATAAAATCCCAGAGCTGAATGAATACCAATGTGGTACGGCTGCGATGC
ATTCATTAGATGAAGCAAAGCAAATCGCGCAGAATATTCTTGATTCGGGTGTGGCGGTTAACAAGAATGATGAACTTGCC
TTACCAGAATCGATGCTGAAAGAACTTCGCATAGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849