Detailed information NTG0912518

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: SO574_RS10710
• Genome accession: NZ_CP140102
• Coordinates: 2376343..2379729 (+)
• Length: 1128 a.a.
• NCBI ID: WP_322803072.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain VA-1
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2371343..2384729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SO574_RS10690 (SO574_10690)	erpA	2371628..2371969 (-)	342	WP_128810259.1	iron-sulfur cluster insertion protein ErpA	-
SO574_RS10695 (SO574_10695)	hemL	2372207..2373502 (+)	1296	WP_322803069.1	glutamate-1-semialdehyde 2,1-aminomutase	-
SO574_RS10700 (SO574_10700)	-	2373898..2374983 (+)	1086	WP_322803070.1	AI-2E family transporter	-
SO574_RS10705 (SO574_10705)	rsmC	2375091..2376116 (+)	1026	WP_322803071.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
SO574_RS10710 (SO574_10710)	chiS	2376343..2379729 (+)	3387	WP_322803072.1	response regulator	Regulator
SO574_RS10715 (SO574_10715)	-	2380689..2382371 (+)	1683	WP_322803073.1	ABC transporter substrate-binding protein	-
SO574_RS10720 (SO574_10720)	-	2382542..2383528 (+)	987	WP_322803074.1	ABC transporter permease	-
SO574_RS10725 (SO574_10725)	-	2383531..2384556 (+)	1026	WP_322803075.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127103.72 Da
• Isoelectric Point: 5.9354

>NTDB_id=912518 SO574_RS10710 WP_322803072.1 2376343..2379729(+) (chiS) [Vibrio alfacsensis strain VA-1]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHTKDLEEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGQDVESARHNAQQRYIKGSGDQIKTSILPESSDYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNYGTNLLSGPYKDTALGKTFKHLSEDVSAHRKINEDYTPVVVSDFDLENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLVADINRDSSINTLLVGSNHQPRTINTKQQDIQNSLEVVDKALAGQTNVGTYKNGAGEE
FIAAFAPIQTRGITWALVVQLPEKEAFYRVHQLEKLFVIAMLIAIVLVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTKRKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTTEGKIVISANVIDEQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDTS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLATEAEIEATESLAAHGHFQIPEINMDSNNDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPDTLTLIEQEKPELLLLDIMMPGMSGYQVCSELRQTYDHAELPIIM
LTALNQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHVENKLLESELRQRAQIEASLLETQGRLLEQLE
SAPEAIICLREDQRVRFANEAACKLFRRTLEQLRRSSADELIAPKYLTVKQPHYCGKVDIYVEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGSKKDKQELMREVLVDVMSHA
LDYWESATGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKDQSPERAHIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=912518 SO574_RS10710 WP_322803072.1 2376343..2379729(+) (chiS) [Vibrio alfacsensis strain VA-1]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGTCTGCAAAGTACGCTAATGACCGCCTTTTTGGTTCTAAGTATTAC
GCCACTGACGATCACGGCGATCTTCTTCCTGCAATCTCATACTAAAGATCTTGAAGAACAGAGCACATCGCACCTTCTTT
CAGTTCGTGATACCAAGCAACAGCAAATCATCGATTACTTCGCCGCACAAGAAACCGAAGTAATGGGTTTTGTGCGTTCA
GAATTAGCTTATGCGAGTGGTGGACGATTCTACGGCCTGGTTAATGCATTTAGTCGCTTGGGCCAAGATGTCGAAAGCGC
AAGACATAACGCTCAGCAGCGCTACATTAAAGGCAGTGGCGACCAAATCAAAACTTCTATTTTGCCTGAATCTTCAGATT
ACGTAGGCAGTGAACGCTATCGTCTGCTTCATAAGCGCTACCACTGGGCTTATCTAGAATTACTCAAGCGCTCGGATTTC
AACGATATTTTATTGGTCGACATTGATGGGAACGTCACGTATTCAATCAACAAAGACGACAACTATGGCACTAACTTACT
AAGTGGCCCATACAAAGATACCGCATTGGGTAAAACGTTTAAGCATCTCTCTGAAGATGTCAGTGCTCACCGAAAAATCA
ATGAAGACTATACCCCCGTCGTCGTTTCTGACTTTGATCTAGAAAATGGAAAACAAGTCGCATGGCTTGGTGCACCTATT
GTACAGCAAGGCTACTTACACAGTTATGCCATGTTCCGCCTACCAAATAATGGCATCACCAAACTCGTTGCTGATATCAA
CCGTGATTCATCCATCAATACCCTTTTAGTTGGTAGCAACCATCAGCCTCGTACCATTAACACCAAGCAACAAGATATTC
AAAACAGCTTGGAAGTCGTGGATAAAGCCCTTGCTGGTCAAACAAACGTTGGTACCTACAAAAATGGTGCGGGCGAAGAA
TTTATCGCCGCATTTGCGCCTATCCAAACCCGAGGGATAACTTGGGCATTGGTGGTTCAACTACCAGAAAAAGAAGCTTT
TTATCGCGTTCATCAGCTGGAAAAGCTATTCGTTATTGCAATGCTTATCGCTATTGTTCTAGTAGTCATTGCATCACATT
ACCTGTCTAACTTCATTACTTCTCCTCTACTCAAATTAACGTGGGCTGCTGAAAAGGTTTCCGCAGGTGATCTAGACGAA
ACCACATTTAATACCAAGCGCAAGGATGAAATTGGCCGTCTAGCCATTAGTTTTGAGCGTATGCAACGTTCTATTCGCGA
GAAGATTCAAACCATCAAGCAACAAAACGAAGAGCTCGAGAGCAACATCAAACTGATCCAAAAGCAGAACGAAGAGTTGC
AACTCGCAGACAAACTCAAAGATGAATTCCTAGCAACGACGTCCCACGAATTACGTACACCACTGCACGGGATGGTAGGA
ATTGCAGAAACCCTAGTCTCGGGTGCGAATGGTGCCATTCCAGCGAGCCAAAAGTATCAACTAGACATCATCATTAAAAG
TGGTCAACGCTTAGCAAACCTAGTAGATGACCTATTGGATTACCACAAAATGCGTTATGGCAGCATGGATATCCAAAAGT
CGGCAGTTAGCCTTGCGAGTGCCACTCGCTTGGTGCTTGAGCTTTCAAATCATTTACTTGGAAACAAAACCATCCGAATC
ATCAATCAAGTTCCCGCTGATTTAAAAGCCGTTTCAGCCGATCCTCAGCGCTTAGAGCAAGTGCTGTATAACTTGATCGG
CAACGCGATCAAGTACACCACTGAGGGGAAAATAGTCATCTCGGCCAATGTCATTGATGAGCAAGTCCGAGTTCAAGTAG
TCGATACTGGCCAAGGTATTCCAGCTGAACACCTCGAGCATATTTTTGAACCGCTTATCCAGGCAGGACAAGATACCAGC
CGTTATCGTCAAGGTGCCGGTTTGGGGCTATCAATTAGCCGTCAATTGATTGAGTTAATGGGCGGGTCACTCTACGTGAG
CAGCCAGCCAATGGTCGGGACGACATTTAGTTTCACTCTGCCACTGGCTACGGAAGCAGAAATTGAAGCTACTGAAAGTC
TTGCTGCTCACGGACATTTCCAAATTCCTGAAATTAATATGGACAGCAACAACGATCTTTCTCTACCAGAAAATCCTGAC
GGTCCTCTTCTTTATGTTGCCGACGATGAACCGGTTAACTTACGCGTGTTAGAAAGCTTCTTGCGGTTAGAGGGTTACCG
AGTACGTACCGTTTCAGATGGTCCTGATACACTAACGTTGATCGAACAAGAAAAGCCAGAACTCTTGTTACTCGATATCA
TGATGCCGGGAATGAGCGGCTATCAAGTTTGTAGCGAATTGCGTCAAACATACGATCACGCTGAACTGCCAATCATTATG
CTCACCGCTCTGAATCAAACTGAAGACCGTGTTCGTGGATTTGAAGCCGGTGCTAATGATTATCTATCAAAGCCATTTAA
CAAACAGGAGCTTGCTGCTCGGATTCAAGCCCACCTTACGGCAAGTAAAGCTGAAATGCGTCATGTCGAGAACAAACTCC
TAGAGTCTGAGCTCCGACAGCGAGCACAAATTGAAGCAAGCTTGCTAGAAACACAAGGACGGTTACTTGAACAATTGGAA
TCGGCTCCTGAAGCCATCATTTGCTTGCGTGAAGACCAACGGGTGCGTTTTGCCAATGAAGCCGCATGCAAATTGTTTAG
ACGGACTTTGGAGCAGCTTAGACGATCTTCAGCAGATGAGTTAATCGCGCCAAAATACCTCACAGTCAAGCAACCACATT
ACTGCGGCAAGGTGGATATATACGTTGAGGATATTCGCCAAAATATTGAAGCAGACATTCTTAAACTTCCTGAGGGCTCA
GGCCTAGATGTCATGTACATCTTTAACGTCGGTGGTGGGGCAAATGCAGCGCGTATCCACAATTTGGAAACTGCCGTTGA
AGTACTGTCGAGCTATGCATTCGATGGCGACAAGGACCAACTTCAAAAATTGAAAGAGCTTGGTGGGGAATTTACTCGTC
TTGCAGACAAAGCATTGGGCAGTAAAAAGGATAAACAAGAACTCATGCGTGAAGTTCTCGTCGATGTCATGTCGCACGCG
CTTGATTATTGGGAATCTGCAACCGGAGAAACCAAATTCGCTTTTGCAGAACAAAGTGGTTTGTGGCGTGTCTATCTCGA
CCGAAGTACGCTACAAACTCGTACACTCGATAAATATATGCGCATTGAAACGCTGCCTAAAACGCCACGCTGGCGAACGG
TGCTAAGCTCTATCGAGTTCATTCTTGAGCATTGTAAGGACCAAAGTCCAGAGCGTGCTCATATAGAAGCTCAACGAGAC
AAGTTACAAAGATTGCTTACCAGTTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.106	100	0.762