Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   SO574_RS06190 Genome accession   NZ_CP140102
Coordinates   1316706..1318127 (-) Length   473 a.a.
NCBI ID   WP_322804023.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1311706..1323127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS06165 (SO574_06165) - 1312231..1312881 (+) 651 WP_322804020.1 thiopurine S-methyltransferase -
  SO574_RS06170 (SO574_06170) purT 1313020..1314195 (-) 1176 WP_322804021.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  SO574_RS06175 (SO574_06175) cdd 1314343..1315230 (-) 888 WP_322804022.1 cytidine deaminase -
  SO574_RS06180 (SO574_06180) - 1315594..1316271 (-) 678 WP_211919319.1 LrgB family protein -
  SO574_RS06185 (SO574_06185) - 1316273..1316647 (-) 375 WP_128811003.1 CidA/LrgA family protein -
  SO574_RS06190 (SO574_06190) sbcB 1316706..1318127 (-) 1422 WP_322804023.1 exodeoxyribonuclease I Machinery gene
  SO574_RS06195 (SO574_06195) - 1318325..1319020 (-) 696 WP_322804024.1 NAD(P)H-binding protein -
  SO574_RS06200 (SO574_06200) cobT 1320136..1321182 (+) 1047 WP_322804025.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  SO574_RS06205 (SO574_06205) - 1321182..1321985 (+) 804 WP_322804026.1 adenosylcobinamide-GDP ribazoletransferase -
  SO574_RS06210 (SO574_06210) cobU 1321982..1322515 (+) 534 WP_221069381.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54620.90 Da        Isoelectric Point: 5.1806

>NTDB_id=912513 SO574_RS06190 WP_322804023.1 1316706..1318127(-) (sbcB) [Vibrio alfacsensis strain VA-1]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGISPQKAMQEGLSEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKFFDYFYSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHQRLYTKREELGGQLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQKCLDNLALLRQHPEIREKLINLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPINLAALDIEFGDKR
IKPLLFRYRARHYPNTLDEQEQRRWTLHCRDVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=912513 SO574_RS06190 WP_322804023.1 1316706..1318127(-) (sbcB) [Vibrio alfacsensis strain VA-1]
ATGCACCAAGACAATCAGCCCACTTTCTTTTTCTTTGACTATGAGACTTGGGGAACAAGCCCAGCCAAAGATCGCCCTAG
CCAATTTGCTGGCGTTCGTACAGATGAGAACTTTAATATCATTGGCGAACCTTTGGTGATGTACTGCCGACCACCAGCGG
ATTACCTCCCGTCTCCAGAGGCCGCTTTGATTACCGGTATTTCACCGCAAAAAGCGATGCAAGAGGGCCTTTCTGAGCCT
GAATTTATTGCAAAAATACACGCTGAGCTCTCTAAGCCAAATACCACAAGTCTTGGATACAACAGCATTCGTTTCGATGA
CGAAGTCACCCGTTATACCTGTTACCGAAACTTTATCGATCCTTATGCATGGAGTTGGCAAAATGGTAACTCGCGCTGGG
ACTTACTCGATGTTATGCGTGCTTGTCACGCTTTGCGTCCTGAGGGCGTGGAGTGGCCAGAAAACGAAGAAGGCTTTACG
AGCTTTAAGCTAGAGCATTTATCAGTGGCAAATGGCATTGAACACAGCAATGCCCATGATGCAATGGCAGATGTCATCGC
TACCATTGAAATGGCCAAAAAAGTCAAAGCTGCACAGCCTAAGTTTTTCGACTACTTCTACTCAATGCGCCACAAGCGTA
AACTTAATGAGTTAGTCGATATCGTCAACATGACGCCATTAATGCACGTTTCTGGCATGTTAGGACGAGAGTGTCAGTAC
ACCAGTTGGATTGTGCCTGTCGCTTGGCACCCAACCAATAATAATGCGGTTATCACAATTGATTTGGCAAAAGATCCTCA
ACCAATTCTTGAGCTGTCGGCAGAAGAGTTACACCAGCGCTTATACACCAAACGTGAAGAATTAGGCGGTCAACTGCCTG
TGCCGGTAAAACTTGTTCATTTAAACAAGTGCCCTATTCTTGCTCCGGCGAAAACGCTGACGGCCGAAAATGCCGAATCC
ATTGGCATTGATCGTCAGAAATGTCTTGATAACCTTGCCTTGCTGCGTCAACACCCAGAAATTCGTGAGAAGCTCATCAA
CCTATTCTCTATTGAGCGTCAGTTTGAAAAAAGTGATGATGTCGATACACAGCTTTATGACGGTTTCTTCTCACCCGCCG
ATCGTGCAGCAATGGACATCATTCGCGAAACGGATCCTATCAATCTCGCGGCGCTTGATATCGAATTTGGCGATAAACGC
ATAAAACCCTTGCTATTTCGCTACCGAGCACGTCATTATCCAAACACGTTAGATGAACAAGAACAAAGACGCTGGACGCT
CCATTGTCGTGACGTTTTCGAAAGCCAAATCGAAGAGTACATGCTTAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAAAAGATAGCAATACTAAAATCAGTCTATCGTTATGTAGAGAGTCTAGCCTCATAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.858

100

0.789